(* $Id$)

AUTODIF classes. More...

#include <math.h>
#include <fcntl.h>
#include <fstream.h>
#include <stdio.h>
#include <iomanip.h>
#include <strstream.h>
#include <dfpool.h>
#include <ivector.h>
#include <gradient_structure.h>
#include "vector_shapex.h"
#include "dvector.h"
#include <stdlib.h>
#include "factors.h"
#include <imatrix.h>
#include <adstring.hpp>
#include <sys/time.h>
#include <iostream>

Go to the source code of this file.

Classes
class	ad_comm
	Description not yet available. More...
class	ad_double
	Stores double value. More...
class	ad_integer
	Stores integer. More...
class	adkludge
	Description not yet available. More...
class	adtimer
	Description not yet available. More...
class	arr_link
	Description not yet available. More...
class	arr_list
	Description not yet available. More...
class	banded_lower_triangular_dmatrix
	Description not yet available. More...
class	banded_lower_triangular_dvar_matrix
	Description not yet available. More...
class	banded_symmetric_dmatrix
	Description not yet available. More...
class	banded_symmetric_dvar_matrix
	Description not yet available. More...
class	cubic_spline_function
	Description not yet available. More...
class	d3_array
	Description not yet available. More...
class	d3_array_position
	Description not yet available. More...
class	d3_index
	Description not yet available. More...
class	d4_array
	Description not yet available. More...
class	d5_array
	Description not yet available. More...
class	d6_array
	Description not yet available. More...
class	d7_array
	Description not yet available. More...
class	dcompressed_triplet
	Description not yet available. More...
class	dependent_variables_information
	Description not yet available. More...
class	dfsdmat
	Description not yet available. More...
class	dfunction_tweaker
	Description not yet available. More...
class	dlink
	Node in dlist. More...
class	dlist
	Link list. More...
class	dmatrix
	Description not yet available. More...
class	dmatrix_index
	Description not yet available. More...
class	dmatrix_position
	Description not yet available. More...
class	double_and_int
	Holds the data for the prevariable class. More...
class	double_index
	Description not yet available. More...
class	double_index_guts
	Description not yet available. More...
class	double_index_type
	Description not yet available. More...
class	dvar3_array
	Description not yet available. More...
class	dvar4_array
	Description not yet available. More...
class	dvar5_array
	Description not yet available. More...
class	dvar6_array
	Description not yet available. More...
class	dvar7_array
	Description not yet available. More...
class	dvar_compressed_triplet
	Description not yet available. More...
class	dvar_matrix
	Class definition of matrix with derivitive information . More...
class	dvar_matrix_position
	Description not yet available. More...
class	dvar_vector
	ADMB variable vector. More...
class	dvar_vector_position
	Description not yet available. More...
class	dvariable
	Fundamental data type for reverse mode automatic differentiation. More...
class	dvector_index
	Description not yet available. More...
class	dvector_position
	Description not yet available. More...
class	fmm
	Functions and variables for function minimizer. More...
class	fmm_control
	Function minimizer control. More...
class	fmmc
	Description not yet available. More...
class	fmmq
	Description not yet available. More...
class	fmmt
	Description not yet available. More...
class	fmmt1
	Description not yet available. More...
class	four_array_shape
	Description not yet available. More...
class	function_minimizer_exception
	Description not yet available. More...
class	function_tweaker
	Description not yet available. More...
class	funnel_dvariable
	Description not yet available. More...
class	grad_stack
	Description not yet available. More...
class	grad_stack_entry
	Holds derivative information for arithmetic operators and math library functions. More...
class	hs_symbolic
	Description not yet available. More...
class	i3_array
	Description not yet available. More...
class	i3_index
	Derived class of index types for i3_array. More...
class	i4_array
	Description not yet available. More...
class	i4_index
	Derived class of index types for i4_array. More...
class	i5_array
	Description not yet available. More...
class	independent_variables
	Description not yet available. More...
class	index_guts
	Abstract base class for different index types. More...
class	index_type
	Uses polymorphism to get index information from various data types to be used in constructing and allocating admb matrices and vectors. More...
class	indvar_offset_list
	Description not yet available. More...
class	ivector_position
	Description not yet available. More...
class	kkludge_object
	Null class to allow specialized function overloads. More...
class	lmatrix
	Description not yet available. More...
class	lmatrix_position
	Description not yet available. More...
class	lower_triangular_dmatrix
	Description not yet available. More...
class	lvector
	Description not yet available. More...
class	lvector_position
	Description not yet available. More...
class	mat_shape
	Description not yet available. More...
class	mat_shapex
	Description not yet available. More...
class	matrix_index
	Derived class of index types for imatrix. More...
class	multi_index
	Description not yet available. More...
class	number_index
	Derived class of index types for ad_integer. More...
class	pre_column_print
	Description not yet available. More...
class	pre_double_index_type
	Description not yet available. More...
class	pre_index_type
	Description not yet available. More...
class	pre_zero_print
	Description not yet available. More...
class	predvar_vector
	Description not yet available. More...
class	predvector
	Description not yet available. More...
class	prefixed
class	preivector
	Description not yet available. More...
class	prescientific
class	preshowpoint
class	prevariable
	Base class for dvariable. More...
class	prevariable_position
	Description not yet available. More...
class	ptr_vector
	Description not yet available. More...
class	random_number_generator
	Description not yet available. More...
class	sdmatrix
	Description not yet available. More...
class	sing_val_decomp
	Description not yet available. More...
class	smart_counter
	Keeps track of total number of copies. More...
class	spdll_exception
	Description not yet available. More...
class	three_array_shape
	Description not yet available. More...
class	ts_vector_shape_pool
	Description not yet available. More...
class	uistream
	Description not yet available. More...
class	uostream
	Description not yet available. More...
class	vcubic_spline_function
	Description not yet available. More...
class	vector_index
	Derived class of index types for ivector. More...
class	vector_range_exception
	Description not yet available. More...
class	vector_shape
	Description not yet available. More...
class	vector_shape_pool
	Description not yet available. More...
Defines
#define	__GNU__
#define	__NUMBERVECTOR__
#define	__USE_IOSTREAM__
#define	_VECTOR_SHAPE
#define	AD_LONG_INT long int
#define	AD_SET_DERIVATIVES1(depvar, indvar, df)
#define	AD_SET_DERIVATIVES2(depvar, indvar1, df1, indvar2, df2)
#define	AD_SET_DERIVATIVES3(depvar, indvar1, df1, indvar2, df2, indvar3, df3)
#define	AD_SET_DERIVATIVES4(depvar, indvar1, df1, indvar2, df2, indvar3, df3, indvar4, df4)
#define	ADJOINT_CODE(x) gradient_structure::GRAD_STACK1->set_gradient_stack(x);
#define	ADUNCONST(type, obj) type & obj = (type&) _##obj;
	Creates a shallow copy of obj that is not CONST.
#define	BEGIN_MINIMIZATION(nvar, objective_function, ind_vars, gradient, cntrl)
#define	END_MINIMIZATION(nvar, gradient)
#define	M_PI 3.14159265358979323846
#define	MFCL2_CONSTRUCTORS
#define	NO_DERIVS
#define	O_BINARY 0
#define	PI 3.14159265358979323846
#define	USE_HIGHER_ARRAYS
#define	USE_VECTOR_SHAPE_POOL
Typedefs
typedef struct cs_symbolic	css
typedef void(*	exitptr )(int)
typedef int(*	fptr )(const char *format,...)
Functions
dvector	acos (const dvector &t1)
	Description not yet available.
dvar_vector	acos (const dvar_vector &t1)
	Description not yet available.
void	ad_begin_funnel (void)
	Description not yet available.
int	ad_chdir (const char *s)
	Description not yet available.
void	ad_getcd (const adstring &s)
	Description not yet available.
void	ad_set_new_handler (void)
	Description not yet available.
double *	address (const prevariable &v1)
int	admax (int i, int j)
void	ADMB_getcallindex (int)
void	ADMB_getcallindex (double)
void	ADMB_getcallindex (const dvector &)
void	ADMB_getcallindex (const dmatrix &)
void	ADMB_getcallindex (const d3_array &)
void	ADMB_getcallindex (const d4_array &)
void	ADMB_getcallindex (const prevariable &)
void	ADMB_getcallindex (const dvar_vector &)
void	ADMB_getcallindex (const dvar_matrix &)
void	ADMB_getcallindex (const dvar3_array &)
void	ADMB_getcallindex (dvar4_array &)
int	admin (int i, int j)
int	allocated (const ivector &v)
	Description not yet available.
int	allocated (const lvector &v)
	Description not yet available.
int	allocated (const dvector &v)
	Description not yet available.
int	allocated (const dvar_vector &v)
	Description not yet available.
int	allocated (const imatrix &v)
	Description not yet available.
int	allocated (const dmatrix &v)
int	allocated (const dvar_matrix &v)
	Description not yet available.
int	allocated (const i3_array &v)
	Description not yet available.
int	allocated (const d3_array &v)
	Description not yet available.
int	allocated (const dvar3_array &v)
	Description not yet available.
int	allocated (const i4_array &v)
	Description not yet available.
int	allocated (const d4_array &v)
	Description not yet available.
int	allocated (const dvar4_array &v)
	Description not yet available.
int	allocated (const d5_array &v)
	Description not yet available.
int	allocated (const dvar5_array &v)
	Description not yet available.
int	allocated (const d6_array &v)
	Description not yet available.
int	allocated (const dvar6_array &v)
	Description not yet available.
int	allocated (const d7_array &v)
	Description not yet available.
int	allocated (const dvar7_array &v)
	Description not yet available.
int	allocated (const dcompressed_triplet &t)
int	allocated (const dvar_compressed_triplet &t)
void	arr_free (double_and_int *)
	Description not yet available.
double_and_int *	arr_new (unsigned int sz)
	Description not yet available.
ivector	as_factor (const dvector &v, const double eps=1.0e-6)
dvector	asin (const dvector &t1)
	Description not yet available.
dvar_vector	asin (const dvar_vector &t1)
	Description not yet available.
dvector	atan (const dvector &t1)
	Description not yet available.
dvar_vector	atan (const dvar_vector &t1)
	Description not yet available.
dvector	atan2 (const dvector &t1, const dvector &t2)
dvector	atan2 (const dvector &t1, double t2)
dvector	atan2 (double t1, const dvector &t2)
dvar_vector	atan2 (const dvar_vector &t1, const dvar_vector &t2)
dvar_vector	atan2 (const dvar_vector &t1, double t2)
dvar_vector	atan2 (double t1, const dvar_vector &t2)
dvector	atlas_solve_spd (const dmatrix &M, const dvector &x)
dvector	atlas_solve_spd (const dmatrix &M, const dvector &x, int &ierr)
dmatrix	atlas_solve_spd (const dmatrix &M, const dmatrix &x)
dmatrix	atlas_solve_spd_trans (const dmatrix &M, const dmatrix &x)
dvariable	avg (const prevariable &x, const prevariable &y)
	Description not yet available.
double	avg (double x, double y)
	Average of two numbers; constant objects.
dvariable	beta_deviate (const prevariable &_x, const prevariable &_a, const prevariable &_b, double eps=1.e-7)
	Description not yet available.
double	beta_deviate (double x, double a, double b, double eps=1.e-7)
	Description not yet available.
double	betacf (const double _a, const double _b, double _x, int maxit=100)
	Incomplete beta function for constant objects.
dvariable	betacf (const dvariable &_a, const dvariable &_b, const dvariable &_x, int maxit=100)
	Incomplete beta function for variable objects.
dvariable	betai (const dvariable a, const dvariable b, const dvariable x, int maxit=100)
	Incomplete beta function for variable objects.
double	betai (const double a, const double b, const double x, int maxit=100)
	Incomplete beta function for constant objects.
prevariable &	bounded_cumd_norm (const prevariable &x, double)
	Description not yet available.
double	bounded_cumd_norm (double x, double)
	Description not yet available.
double	bounder (double x, double min, double max, double scale)
	Description not yet available.
dvariable	bounder (const prevariable &x, double min, double max, double scale)
	Description not yet available.
double	boundp (double x, double fmin, double fmax, const double &fpen)
	Compute penalty for exceeding bounds on parameter; constant ojbects.
double	boundp (double x, double fmin, double fmax)
	Return scaled variable to original units; constant objects.
dvariable	boundp (const prevariable &x, double fmin, double fmax, const prevariable &fpen)
	Compute penalty for exceeding bounds on parameter; variable ojbects.
dvariable	boundp (const prevariable &x, double fmin, double fmax, const prevariable &fpen, double s)
	Compute penalty for exceeding bounds on parameter; variable ojbects.
dvariable	boundp (double, double, double, double *)
double	boundpin (double x, double fmin, double fmax)
	Scale model variable over [-1,1]; constant objects.
double	boundpin (const prevariable &x, double fmin, double fmax)
	Scale model variable over [-1,1]; variable objects.
double	boundpin (const prevariable &x, double fmin, double fmax, double s)
	Scale model variable over [-1,1]; variable objects.
void	check_choleski_decomp (const banded_symmetric_dvar_matrix &MM, int &ierr)
void	check_derivative_values (const char *s)
	Description not yet available.
void	check_derivative_values (const char *s, int i)
	Description not yet available.
void	check_derivative_values_break (const char *s, int i, int b)
	Description not yet available.
dmatrix	choleski_decomp (const dmatrix &M)
	Description not yet available.
dvar_matrix	choleski_decomp (const dvar_matrix &M)
	Description not yet available.
banded_lower_triangular_dmatrix	choleski_decomp (const banded_symmetric_dmatrix &S, int &ierr)
banded_lower_triangular_dvar_matrix	choleski_decomp (const banded_symmetric_dvar_matrix &S, int &ierr)
dmatrix	choleski_decomp_error (const dmatrix &M, int &ierror)
	Description not yet available.
dmatrix	choleski_decomp_neghess_error (const dmatrix &M, int &ierror)
	Description not yet available.
dmatrix	choleski_decomp_positive (const dmatrix &MM, const int &ierr)
	Description not yet available.
dmatrix	choleski_decomp_positive (const dmatrix &MM, double bound)
	Description not yet available.
banded_lower_triangular_dvar_matrix	choleski_decomp_positive (const banded_symmetric_dvar_matrix &S, double eps, dvariable &fpen)
	Description not yet available.
banded_lower_triangular_dmatrix	choleski_decomp_trust_bound (const banded_symmetric_dmatrix &_M, const int &_ierr)
	Description not yet available.
dvector	choleski_solve_error (dmatrix M, dvector &v, int &ierror)
	Description not yet available.
dvector	choleski_solve_neghess_error (dmatrix M, dvector &v, int &ierror)
	Description not yet available.
void	clean (ivector &v, int level)
	Description not yet available.
dvar_vector	colsum (const dvar_matrix &)
	Description not yet available.
dvector	colsum (const dmatrix &)
	Description not yet available.
ivector	colsum (const imatrix &)
	Description not yet available.
int	colsum (const imatrix &, int column)
	Description not yet available.
double	colsum (const dmatrix &, int column)
	Description not yet available.
dvariable	colsum (const dvar_matrix &, int column)
	Description not yet available.
ivector	column (const imatrix &m, int i)
	Return copy of jth column vector from matrix m.
dvector	column (const dmatrix &m, int i)
	Return copy of jth column vector from matrix m.
dvar_vector	column (const dvar_matrix &m, int i)
	Description not yet available.
pre_column_print	column_print (const dvector &v)
	Description not yet available.
dvector	column_value (const dvar_matrix &m, int i)
	Description not yet available.
dmatrix	column_vector (const dvector &)
	Description not yet available.
dvar_matrix	column_vector (const dvar_vector &)
	Description not yet available.
dvector	cos (const dvector &t1)
	Description not yet available.
dvar_vector	cos (const dvar_vector &t1)
	Description not yet available.
dmatrix	cos (const dmatrix &m)
	Description not yet available.
dvar_matrix	cos (const dvar_matrix &m)
	Description not yet available.
d3_array	cos (const d3_array &m)
	Description not yet available.
dvar3_array	cos (const dvar3_array &m)
	Description not yet available.
dvector	cosh (const dvector &t1)
	Description not yet available.
dvar_vector	cosh (const dvar_vector &t1)
	Description not yet available.
int	count_factor (const dvector &v, const double &eps)
int	count_factor (const ivector &v)
dvector	csolve (const dmatrix &aa, const dvector &z)
	Solve a linear system using LU decomposition.
double	cube (double x)
	Cube of a number; constant objects.
dvector	cube (const dvector &x)
	Description not yet available.
dmatrix	cube (const dmatrix &x)
	Description not yet available.
d3_array	cube (const d3_array &x)
	Description not yet available.
prevariable &	cube (const prevariable &x)
	Cube of a number; variable object.
dvar_vector	cube (const dvar_vector &x)
	Description not yet available.
dvar_matrix	cube (const dvar_matrix &x)
	Description not yet available.
dvar3_array	cube (const dvar3_array &x)
	Description not yet available.
dvariable	cumbvn (const dvariable &x, const dvariable &y, const dvariable &rho)
	Cumulative bivariate normal distribution.
dvariable	cumbvn (const dvariable &xl, const dvariable &yl, const dvariable &xu, const dvariable &yu, const dvariable &rho)
	Cumulative bivariate normal distribution.
dvariable	cumd_bivariate_normal (const prevariable &xu, const prevariable &yu, const prevariable &rho, int nbox)
double	cumd_cauchy (const double &x)
	Description not yet available.
dvariable	cumd_cauchy (const prevariable &x)
	Description not yet available.
dvariable	cumd_exponential (const prevariable &x)
	Description not yet available.
double	cumd_exponential (double x)
	Description not yet available.
dvariable	cumd_gamma (const dvariable &x, const dvariable &a)
double	cumd_gamma (double x, double a)
double	cumd_logistic (const double &x)
	Description not yet available.
dvariable	cumd_logistic (const prevariable &x)
	Description not yet available.
double	cumd_norm (const double &x)
	Culative normal distribution; constant objects.
double	cumd_norm (const double &x, double)
prevariable &	cumd_norm (const prevariable &x)
	Culative normal distribution; variable objects.
prevariable &	cumd_norm_logistic (const prevariable &x, double)
	Description not yet available.
double	cumd_norm_logistic (double x, double)
	Description not yet available.
dvariable	cumd_normal_cauchy_mixture (const prevariable &_x, double _a)
dvar_vector	cumd_normal_cauchy_mixture (const dvar_vector &_x, double _a)
dvariable	cumd_normal_mixture (const prevariable &_x, double _a)
dvar_vector	cumd_normal_mixture (const dvar_vector &_x, double _a)
dvector	cumd_pareto (const dvector &_y, double alpha, double xm)
dvar_vector	cumd_pareto (const dvar_vector &_y, const prevariable &alpha, const prevariable &xm)
dvariable	cumd_pareto (const prevariable &_y, const prevariable &alpha, const prevariable &xm)
double	cumd_pareto (double _y, double alpha, double xm)
dvector	cumd_upper_trunc_pareto (const dvector &_y, double alpha, double xm)
dvar_vector	cumd_upper_trunc_pareto (const dvar_vector &_y, const prevariable &alpha, const prevariable &xmin, const prevariable &xmax)
dvariable	cumd_upper_trunc_pareto (const prevariable &_y, const prevariable &alpha, const prevariable &xmin, const prevariable &xmax)
void	default_evaluation (void)
	Description not yet available.
void	default_evaluation0 (void)
	Description not yet available.
void	default_evaluation1 (void)
	Description not yet available.
void	default_evaluation1m (void)
	Description not yet available.
void	default_evaluation2 (void)
	Description not yet available.
void	default_evaluation3 (void)
	Description not yet available.
void	default_evaluation3ind (void)
	Description not yet available.
void	default_evaluation4 (void)
	Description not yet available.
void	default_evaluation4ind (void)
	Description not yet available.
void	default_evaluation4m (void)
	Description not yet available.
double	density_cauchy (const double &x)
	Description not yet available.
void	derch (const double &f, const independent_variables &x, const dvector &g, int n, const int &ireturn)
	Description not yet available.
void	derch (const double &f, const dvector &x, const dvector &gg, int n, const int &ireturn)
void	df_check_derivative_values (void)
	Description not yet available.
void	df_check_derivative_values_indexed (void)
	Description not yet available.
void	df_check_derivative_values_indexed_break (void)
	Description not yet available.
dvariable	dfatan1 (dvariable, double, double, const prevariable &fpen)
	Scale input variable between upper and lower bounds and compute a penalty for exceeding the bounds.
dvariable	dfatan1 (dvariable, double, double, double *)
dvariable	dfboundp (double, double, double, double *)
dvariable	dfboundp (const prevariable &, double, double)
	Computes the derivative of dvariable boundp(const prevariable& x, double fmin, double fmax,const prevariable& _fpen)
void	dfinvpret (void)
	Adjoint code for dvar_matrix inv(const dvar_matrix& aa).
double	dflogistic (double a, double b, const double &x)
dvariable	dflogistic (double a, double b, const prevariable &x)
	Description not yet available.
double	dfposfun (const double &x, const double eps)
	Adjoint code for posfun; possibly not used.
dvariable	dfposfun (const prevariable &x, const double eps)
	Adjoint code for posfun; possibly not used.
double	dfposfun1 (const double &x, const double eps)
	Adjoint code for posfun; possibly not used.
double	dftinv (double, double, double)
	Inverse of dvariable dfatan1(dvariable x, double fmin, double fmax, const prevariable& _fpen)
dvector	diagonal (const dmatrix &)
	Description not yet available.
ivector	diagonal (const imatrix &)
	Description not yet available.
dvar_vector	diagonal (const dvar_matrix &)
	Description not yet available.
dmatrix	diagonal_matrix (const dvector &v)
dvar_matrix	diagonal_matrix (const dvar_vector &v)
double	dmax (double i, double j)
	Returns the maximum of two numbers.
void	dmdm_prod (void)
	Description not yet available.
double	dmin (double, double)
	Returns the minimum of two numbers.
double	dot (const dmatrix &M, const dmatrix &d2)
	Description not yet available.
void	dv_init (void)
	Description not yet available.
void	dvdv_dot (void)
dvector	eigenvalues (const dmatrix &m1)
	Eigenvalues.
dvar_vector	eigenvalues (const dvar_matrix &m1)
dvector	eigenvalues (const banded_symmetric_dmatrix &_SS)
	Description not yet available.
dmatrix	eigenvectors (const dmatrix &m1)
	Eigenvectors.
dmatrix	eigenvectors (const dmatrix &m1, const dvector &eigenvalues)
	Eigenvectors.
dvar_matrix	eigenvectors (const dvar_matrix &m1)
	Eigenvectors.
dmatrix	eigenvectors (const banded_symmetric_dmatrix &_SS, const dvector &e)
	Description not yet available.
dmatrix	elem_div (const dmatrix &m, const dmatrix &m2)
	Description not yet available.
dvar_matrix	elem_div (const dvar_matrix &m, const dvar_matrix &m2)
	Description not yet available.
dvar_matrix	elem_div (const dvar_matrix &m, const dmatrix &m2)
	Description not yet available.
dvar_matrix	elem_div (const dmatrix &m, const dvar_matrix &m2)
	Description not yet available.
d3_array	elem_div (const d3_array &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	elem_div (const dvar3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	elem_div (const d3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	elem_div (const dvar3_array &m1, const d3_array &m2)
	Description not yet available.
dmatrix	elem_prod (const dmatrix &m, const dmatrix &m2)
	Description not yet available.
dvar_matrix	elem_prod (const dvar_matrix &m, const dvar_matrix &m2)
	Description not yet available.
dvar_matrix	elem_prod (const dvar_matrix &m, const dmatrix &m2)
	Description not yet available.
dvar_matrix	elem_prod (const dmatrix &m, const dvar_matrix &m2)
	Description not yet available.
d3_array	elem_prod (const d3_array &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	elem_prod (const dvar3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	elem_prod (const d3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	elem_prod (const dvar3_array &m1, const d3_array &m2)
	Description not yet available.
dvar_matrix	empirical_covariance (const dvar_matrix &v1)
	Description not yet available.
dvar_matrix	empirical_covariance (const dvar_matrix &v1, const imatrix &missflags)
	Description not yet available.
void	exit_handler (int k)
	Description not yet available.
dvector	exp (const dvector &t1)
	Description not yet available.
dvar_vector	exp (const dvar_vector &t1)
	Description not yet available.
dmatrix	exp (const dmatrix &m)
	Description not yet available.
dvar_matrix	exp (const dvar_matrix &m)
	Description not yet available.
d3_array	exp (const d3_array &m)
	Description not yet available.
dvar3_array	exp (const dvar3_array &m)
	Description not yet available.
d4_array	exp (const d4_array &x)
	Description not yet available.
dvar4_array	exp (const dvar4_array &x)
	Description not yet available.
d5_array	exp (const d5_array &x)
dvar5_array	exp (const dvar5_array &x)
	Description not yet available.
double	expdev (const random_number_generator &_rng)
	Description not yet available.
dmatrix	expm (const dmatrix &A)
	Matrix exponential.
dvar_matrix	expm (const dvar_matrix &A)
	Matrix exponential.
dvector	extract_column (const dmatrix &m, int i)
	Extract copy of jth column vector from matrix m.
dvar_vector	extract_column (const dvar_matrix &m, int i)
	Description not yet available.
dvector	extract_row (const dmatrix &m, int j)
	Description not yet available.
dvar_vector	extract_row (const dvar_matrix &m, int j)
	Description not yet available.
dmatrix	fabs (const dmatrix &m)
	Description not yet available.
d3_array	fabs (const d3_array &m)
dvar3_array	fabs (const dvar3_array &m)
dvariable	factln (const dvariable &n)
	Log-factorial $\ln(n!)$ .
double	factln (double n)
	Log-factorial $\ln(n!)$ .
dvar_vector	factln (const dvar_vector &n)
	Log-factorial of an array.
dvector	factln (const dvector &n)
	Log-factorial of an array.
void *	farptr_norm (void *)
dmatrix	fillout (const lower_triangular_dmatrix &M)
	Description not yet available.
dmatrix	fillout_trans (const lower_triangular_dmatrix &M)
	Description not yet available.
void	fmin (double f, const independent_variables &x, const dvector &g, const int &n, const dvector &w, const dvector &h, const fmm_control &fmc)
void	fmmdisp (const dvector &x, const dvector &g, const int &nvar, int scroll_flag, int noprintx=0)
	Description not yet available.
void	fmmdisp (const double x, const double g, const int &nvar, int scroll_flag, int noprintx=0)
	Description not yet available.
double	fourth (double x)
	Fourth power of a number; constant objects.
double	gamma_density (double _x, double r, double mu)
	Gamma probability density function; constant objects.
dvariable	gamma_density (const prevariable &_x, double r, double mu)
	Gamma probability density function; variable objects.
dvariable	gamma_density (const dvariable &_x, const dvariable &_r, const dvariable &_mu)
	Gamma probability density function; variable objects.
double	gamma_deviate (double _x, double _a)
dvariable	gamma_deviate (const prevariable &_x, const prevariable &_a)
dvar_vector	gammln (const dvar_vector &n)
	Log-Gamma of an array.
dvector	gammln (const dvector &n)
	Log-Gamma of an array.
double	gammln (double xx)
	Log gamma function.
dvariable	gammln (const prevariable &xx)
double	gasdev (const random_number_generator &_rng)
	Description not yet available.
void	gauss_hermite (const dvector &_x, const dvector &_w)
	Gauss-Hermite quadature.
void	gauss_legendre (double x1, double x2, const dvector &_x, const dvector &_w)
	Gauss-Legendre quadature.
void	gauss_legendre (const dvector &_x, const dvector &_w)
	Gauss-Legendre quadature.
dvector	get_eigen_values (const dvector &_d, const dvector &_e)
	Eigenvalues.
dvar_vector	get_eigen_values (const dvar_vector &_d, const dvar_vector &_e)
	Eigenvalues and eigenvectors.
dvector	get_eigen_values (const dvector &_d, const dvector &_e, const dmatrix &_z)
	Eigenvalues and eigenvectors.
adstring	get_string_marker (void)
	Description not yet available.
double	ghk (const dvector &lower, const dvector &upper, const dmatrix &Sigma, const dmatrix &eps)
	Description not yet available.
double	ghk (const dvector &lower, const dvector &upper, const dmatrix &Sigma, const dmatrix &eps, int i)
	Description not yet available.
dvariable	ghk (const dvar_vector &lower, const dvar_vector &upper, const dvar_matrix &Sigma, const dmatrix &eps)
	Description not yet available.
dvariable	ghk (const dvar_vector &lower, const dvar_vector &upper, const dvar_matrix &Sigma, const dmatrix &eps, int i)
	Description not yet available.
double	ghk_choleski (const dvector &lower, const dvector &upper, const dmatrix &ch, const dmatrix &eps)
dvariable	ghk_choleski_m (const dvar_vector &upper, const dvar_matrix &ch, const dmatrix &eps)
	Description not yet available.
dvariable	ghk_choleski_m_cauchy (const dvar_vector &upper, const dvar_matrix &ch, const dmatrix &eps)
	Description not yet available.
dvariable	ghk_choleski_m_logistic (const dvar_vector &upper, const dvar_matrix &ch, const dmatrix &eps)
	Description not yet available.
void	grad_chk (void)
	Description not yet available.
void	gradcalc (int nvar, const dvector &g)
	Compute the gradient from the data stored in the global gradient_structure.
double	gradcalc (int nvar, const dvector &g, dvariable &f)
	Compute the gradient from the data stored in the global gradient_structure.
void	gradfree (dlink *)
	Description not yet available.
ivector	histogram (double min, double max, int nbin, const dvector &input)
	Description not yet available.
dmatrix	identity_matrix (int min, int max)
	Create a Identity matrix.
void	insert_identifier_string (const char *s)
	Description not yet available.
dvariable	inv (const prevariable &x)
dmatrix	inv (const dmatrix &m1, const double &_ln_det, const int &_sgn)
	Inverse of a constant matrix by LU decomposition.
double	inv_cumd_beta_stable (double a, double b, double y, double eps=1.e-7)
dvariable	inv_cumd_beta_stable (const prevariable &_a, const prevariable &_b, const prevariable &_y, double eps=1.e-7)
double	inv_cumd_cauchy (const double &x)
	Description not yet available.
dvariable	inv_cumd_cauchy (const prevariable &x)
	Description not yet available.
dvariable	inv_cumd_exponential (const prevariable &y)
	Description not yet available.
double	inv_cumd_exponential (double y)
	Description not yet available.
dvariable	inv_cumd_gamma (const prevariable &_y, const prevariable &_a)
double	inv_cumd_gamma (double _y, double _a)
double	inv_cumd_logistic (const double &x)
	Description not yet available.
dvariable	inv_cumd_logistic (const prevariable &x)
	Description not yet available.
double	inv_cumd_norm (const double &x)
	Description not yet available.
dvariable	inv_cumd_norm (const prevariable &x)
	Description not yet available.
dvar_vector	inv_cumd_norm (const dvar_vector &x)
	Description not yet available.
dvariable	inv_cumd_norm_logistic (const prevariable &x, double)
	Description not yet available.
double	inv_cumd_norm_logistic (double x, double)
	Description not yet available.
dvariable	inv_cumd_normal_logistic_mixture (const prevariable &_x, double _a)
double	inv_cumd_normal_logistic_mixture (double _x, double _a)
	Description not yet available.
dvariable	inv_cumd_normal_mixture (const prevariable &_x, double _a)
	Description not yet available.
double	inv_cumd_normal_mixture (double _x, double _a)
	Description not yet available.
dvector	inv_cumd_pareto (const dvector &_y, double alpha, double xm)
dvar_vector	inv_cumd_pareto (const dvar_vector &_y, const prevariable &alpha, const prevariable &xm)
dvariable	inv_cumd_pareto (const prevariable &_y, const prevariable &alpha, const prevariable &xm)
double	inv_cumd_pareto (double _y, double alpha, double xm)
double	inv_cumd_t (double n, double y, double eps=1.e-7)
	Description not yet available.
dvariable	inv_cumd_t (const prevariable &n, const prevariable &y, double eps=1.e-7)
	Description not yet available.
dvector	inv_cumd_upper_trunc_pareto (const dvector &_y, double alpha, double xmin, double xmax)
dvar_vector	inv_cumd_upper_trunc_pareto (const dvar_vector &_y, const prevariable &alpha, const prevariable &xmin, const prevariable &xmax)
double	inv_cumd_upper_trunc_pareto (double _y, double alpha, double xmin, double xmax)
void	jacobcalc (int nvar, const dmatrix &g)
	Description not yet available.
void	jacobcalc (int nvar, const ofstream &ofs)
	Description not yet available.
void	jacobcalc (int nvar, const uostream &ofs)
	Description not yet available.
dvariable	kludge_cumd_cauchy (const prevariable &x)
	Description not yet available.
dvariable	ln_det (const dvar_matrix &)
double	ln_det (const dcompressed_triplet &)
double	ln_det (const dcompressed_triplet &, const hs_symbolic &)
double	ln_det (const dcompressed_triplet &, int &ierr)
dvariable	ln_det (const dvar_compressed_triplet &, int &ierr)
dvariable	ln_det (dvar_compressed_triplet &, hs_symbolic &, laplace_approximation_calculator *)
dvariable	ln_det (dvar_compressed_triplet &)
dvariable	ln_det (dvar_compressed_triplet &, hs_symbolic &)
dvariable	ln_det (dvar_compressed_triplet &, hs_symbolic &, dcompressed_triplet &)
dvariable	ln_det_choleski (const banded_symmetric_dvar_matrix &S, int &ierr)
double	ln_det_choleski (const banded_symmetric_dmatrix &S, int &ierr)
dvariable	ln_det_choleski (const dvar_matrix &M)
	Description not yet available.
dvariable	ln_det_choleski_error (const dvar_matrix &, int &ierr)
	Description not yet available.
dvar_vector	ln_pareto_density (const dvar_vector &_y, const prevariable &alpha, const prevariable &xm)
dvariable	ln_pareto_density (const prevariable &_y, const prevariable &alpha, const prevariable &xm)
dvar_vector	ln_pareto_upper_trunc_density (const dvar_vector &y, const prevariable &alpha, const prevariable &xmin, const prevariable &xmax)
dvar_vector	ln_upper_trunc_pareto_density (const dvar_vector &_y, const prevariable &alpha, const prevariable &xm)
dvariable	ln_upper_trunc_pareto_density (const prevariable &_y, const prevariable &alpha, const prevariable &xmin, const prevariable &xmax)
dvector	log (const dvector &t1)
	Description not yet available.
dvar_vector	log (const dvar_vector &t1)
	Description not yet available.
dmatrix	log (const dmatrix &m)
	Description not yet available.
dvar_matrix	log (const dvar_matrix &m)
	Description not yet available.
d3_array	log (const d3_array &m)
	Description not yet available.
dvar3_array	log (const dvar3_array &m)
	Description not yet available.
d4_array	log (const d4_array &x)
	Description not yet available.
dvar4_array	log (const dvar4_array &x)
	Description not yet available.
d5_array	log (const d5_array &x)
dvar5_array	log (const dvar5_array &x)
	Description not yet available.
dvector	log10 (const dvector &t1)
	Description not yet available.
dvar_vector	log10 (const dvar_vector &t1)
	Description not yet available.
dvar_vector	log_comb (const dvar_vector &n, const dvector &k)
	Log-binomial of two arrays.
dvariable	log_comb (double n, const dvariable &k)
	Log of the binomial coefficent i.e log of 'n choose k'.
dvar_vector	log_comb (const dvar_vector &n, const dvar_vector &k)
	Log-binomial of two arrays.
dvar_vector	log_comb (const dvector &n, const dvar_vector &k)
	Log-binomial of a number with an arrays.
dvar_vector	log_comb (double n, const dvar_vector &k)
	Log-binomial of a number with an arrays.
dvar_vector	log_comb (const dvariable &n, const dvector &k)
	Log-binomial of a number with an arrays.
dvar_vector	log_comb (const dvariable &n, const dvar_vector &k)
	Log-binomial of a number with an arrays.
dvariable	log_comb (const dvariable &n, double k)
	Log of the binomial coefficent i.e log of 'n choose k'.
dvariable	log_comb (const dvariable &n, const dvariable &k)
	Log of the binomial coefficent i.e log of 'n choose k'.
dvector	log_comb (const dvector &n, const dvector &k)
	Log-binomial of two arrays.
dvector	log_comb (double n, const dvector &k)
	Log-binomial of a number with an arrays.
double	log_comb (double n, double k)
	Log of the binomial coefficent; i.e log of 'n choose k'.
double	log_density_cauchy (const double &x)
	Description not yet available.
double	log_density_negbinomial (double x, double mu, double tau)
	Log negative bionomial density; constant objects.
dvariable	log_density_poisson (double x, const prevariable &mu)
	Log Poisson density; variable objects.
double	log_density_poisson (double x, double mu)
	Log Poisson density; constant objects.
dvariable	log_der_logistic (double a, double b, const prevariable &x)
	Description not yet available.
double	log_gamma_density (double _x, double r, double mu)
	Log gamma probability density function; constant objects.
dvariable	log_gamma_density (const prevariable &_x, double r, double mu)
	Log gamma probability density function; variable objects.
dvariable	log_gamma_density (const dvariable &_x, const dvariable &_r, const dvariable &_mu)
	Log gamma probability density function; variable objects.
double	log_negbinomial_density (double x, double mu, double tau)
dvariable	log_negbinomial_density (double x, const prevariable &mu, const prevariable &tau)
	Log negative bionomial density; variable objects.
double	logistic (double a, double b, const double &x)
dvariable	logistic (double a, double b, const prevariable &x)
	Description not yet available.
dvector	lower_triagnular_solve_trans (const dmatrix &M, const dvector &y)
dvector	lower_triagular_solve (const dmatrix &m, const dvector &v)
lower_triangular_dmatrix	lower_triangular_choleski_decomp_positive (const dmatrix &MM, const int &_ierr)
	Description not yet available.
double	lower_triangular_ln_det (const dmatrix &m)
double	lower_triangular_ln_det (const dmatrix &m, int &sgn)
dvariable	lower_triangular_ln_det (const dvar_matrix &m)
	Description not yet available.
dvariable	lower_triangular_ln_det (const dvar_matrix &m, int &sgn)
	Description not yet available.
dvector	lower_triangular_solve (const dmatrix &M, const dvector &v)
	Description not yet available.
dvar_vector	lower_triangular_solve (const dvar_matrix &M, const dvar_vector &v)
	Description not yet available.
void	ludcmp (const dmatrix &a, const ivector &indx, const double &d)
	Lu decomposition of a constant matrix.
void	ludcmp_index (const dmatrix &a, const ivector &indx, const double &d)
	LU decomposition.
dmatrix	make_dmatrix (dcompressed_triplet &M)
int	make_sub_directory (const char *s)
	Create a sub directory s.
dmatrix	MAT (const dvector &, int i, int j)
	The MAT operator is the inverse of the VEC operator.
dvar_matrix	MAT (const dvar_vector &, int i, int j)
	The MAT operator is the inverse of the VEC operator.
double	max (const dmatrix &)
	Description not yet available.
int	max (const imatrix &)
	Description not yet available.
double	max (const dvector &)
	Description not yet available.
dvariable	max (const dvar_vector &)
	Maximum of a dvar_vector.
int	max (const ivector &t1)
	Description not yet available.
int	Max (const ivector &t1)
	Description not yet available.
unsigned long	max (unsigned long u, unsigned long v)
	Description not yet available.
double	max (const double u, const double v)
	Description not yet available.
int	max (int i, int j, int k)
	Description not yet available.
int	max (int i, int j)
	Largest of two integer; constant objects.
double	mean (const dvector &)
	Description not yet available.
double	mean (const dmatrix &)
	Compute the mean of the matrix m.
double	mean (const d3_array &)
	Description not yet available.
dvariable	mean (const dvar_vector &)
	Description not yet available.
dvariable	mean (const dvar_matrix &)
	Return the variable mean of matrix m.
dvariable	mean (const dvar3_array &)
	Return computed variable mean of variable 3-dimensional array m.
dvariable	mf_upper_bound (const prevariable &x, double M, prevariable &fpen)
	Description not yet available.
double	mf_upper_bound (const double &x, double M, prevariable &fpen)
dvector	mfexp (const dvector &t1)
	Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1.
dvector	mfexp (const dvector &t1, double d)
	Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1.
dvar_vector	mfexp (const dvar_vector &t1)
	Description not yet available.
dvar_vector	mfexp (const dvar_vector &t1, double d)
	Description not yet available.
dmatrix	mfexp (const dmatrix &m)
	Description not yet available.
dmatrix	mfexp (const dmatrix &m, double d)
	Description not yet available.
dvar_matrix	mfexp (const dvar_matrix &m)
	Description not yet available.
dvar_matrix	mfexp (const dvar_matrix &m, double d)
	Description not yet available.
double	mfexp (double)
	Robust exponential function for constant argument > 60 or < -60.
double	mfexp (double, double bound)
	Robust exponential function for constant argument with user specified domain bound.
dvariable	mfexp (const prevariable &)
	Robust exponential function for variable argument > 60 or < -60.
dvariable	mfexp (const prevariable &, double bound)
	Robust exponential function for variable argument with user specified domain bound.
d3_array	mfexp (const d3_array &m)
	Description not yet available.
d3_array	mfexp (const d3_array &m, double d)
	Description not yet available.
dvar3_array	mfexp (const dvar3_array &m)
	Description not yet available.
dvar3_array	mfexp (const dvar3_array &m, double d)
	Description not yet available.
d4_array	mfexp (const d4_array &x)
	Description not yet available.
dvar4_array	mfexp (const dvar4_array &x)
	Description not yet available.
d5_array	mfexp (const d5_array &x)
dvar5_array	mfexp (const dvar5_array &x)
	Description not yet available.
double	min (const dmatrix &)
	Description not yet available.
dvariable	min (const dvar_vector &)
	Minimum of a dvar_vector.
int	min (const ivector &t1)
	Description not yet available.
int	min (int, int)
	Smallest of two integers.
unsigned long	min (unsigned long u, unsigned long v)
	Description not yet available.
double	min (const double u, const double v)
	Description not yet available.
void	myheapcheck (char *)
	Does nothing.
double	nd2fboundp (double x, double minb, double maxb, const double &pen)
	Scale input variable between upper and lower bounds and compute a penalty for exceeding the bounds.
dvar_matrix	nograd_assign (const dmatrix &)
	Description not yet available.
dvariable	nograd_assign (double tmp)
	Description not yet available.
dvar_vector	nograd_assign (dvector tmp)
	Description not yet available.
void	nograd_assign_column (const dvar_matrix &m, const dvector &v, const int &ii)
	Description not yet available.
void	nograd_assign_row (const dvar_matrix &m, const dvector &v, const int &ii)
	Description not yet available.
dvar_matrix	nograd_assign_trans (const dmatrix &m)
	Description not yet available.
double	norm (const d3_array &)
	Description not yet available.
dvariable	norm (const dvar3_array &m)
	Description not yet available.
double	norm (const banded_symmetric_dmatrix &B)
dvariable	norm (const banded_symmetric_dvar_matrix &B)
	Description not yet available.
double	norm2 (const d3_array &)
	Description not yet available.
dvariable	norm2 (const dvar3_array &m)
	Description not yet available.
double	norm2 (const banded_symmetric_dmatrix &B)
dvariable	norm2 (const banded_symmetric_dvar_matrix &B)
	Description not yet available.
int	norm2 (const ivector &)
	Description not yet available.
dvariable	norm_to_gamma (const prevariable &v, const prevariable &alpha, double bound=0.999999)
	Description not yet available.
double	norm_to_gamma (double v, double alpha, double bound=0.999999)
	Description not yet available.
double	normal_tail_right (const double &x)
	Description not yet available.
void	normalized_gauss_hermite (const dvector &_x, const dvector &_w)
	Gauss-Hermite quadature.
int	operator!= (double v0, const prevariable &v1)
	Description not yet available.
dvector	operator& (const dvector &t1, const dvector &t2)
	Description not yet available.
dvar_vector	operator& (const dvar_vector &t1, const dvar_vector &t2)
	Description not yet available.
dvar_vector	operator* (const dvar_vector &t1, double x)
	Description not yet available.
dvar_vector	operator* (const dvar_vector &t1, const prevariable &x)
	Description not yet available.
dvar_vector	operator* (const dvector &t1, const prevariable &x)
	Description not yet available.
dvar_vector	operator* (const prevariable &x, const dvector &t1)
	Description not yet available.
dvector	operator* (const dvector &t1, double x)
	Description not yet available.
dmatrix	operator* (double x, const dmatrix &m)
	Description not yet available.
dmatrix	operator* (const dmatrix &m, double d)
	Description not yet available.
dvar_matrix	operator* (const prevariable &x, const dmatrix &m)
	Description not yet available.
dvar_matrix	operator* (const dvar_matrix &m, const prevariable &x)
	Description not yet available.
dvar_matrix	operator* (const prevariable &x, const dvar_matrix &m)
	Description not yet available.
dvar_matrix	operator* (double x, const dvar_matrix &m)
	Description not yet available.
dvar_matrix	operator* (const dvar_matrix &t1, double x)
	Description not yet available.
imatrix	operator* (const imatrix &, const imatrix &)
	Returns matrix multiplication (m1 x m2).
d3_array	operator* (const d3_array &m1, const d3_array &m2)
dmatrix	operator* (const d3_array &m1, const dvector &m2)
	Description not yet available.
d3_array	operator* (const d3_array &m1, double m2)
	Description not yet available.
d3_array	operator* (double m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator* (const dvar3_array &m1, const d3_array &m2)
dvar3_array	operator* (const dvar3_array &m1, const dvariable &m2)
	Description not yet available.
dvar3_array	operator* (const dvariable &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator* (const dvariable &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	operator* (double m1, const dvar3_array &m2)
	Description not yet available.
dvar_vector	operator+ (double x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator+ (const dvar_vector &t1, double x)
	Description not yet available.
dvar_vector	operator+ (const prevariable &x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator+ (const dvar_vector &t1, const prevariable &x)
	Description not yet available.
dvector	operator+ (double x, const dvector &t1)
	Description not yet available.
dvector	operator+ (const dvector &t1, double x)
	Description not yet available.
dmatrix	operator+ (double x, const dmatrix &m)
	Description not yet available.
dvar_matrix	operator+ (const dvariable &x, const dmatrix &m)
	Description not yet available.
dmatrix	operator+ (const dmatrix &m, double d)
	Description not yet available.
d3_array	operator+ (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	operator+ (const d3_array &m1, double m2)
	Description not yet available.
d3_array	operator+ (double m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator+ (const dvar3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	operator+ (const d3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	operator+ (const dvar3_array &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator+ (const dvar3_array &m1, const dvariable &m2)
	Description not yet available.
dvar3_array	operator+ (const dvariable &d1, const dvar3_array &m1)
	Description not yet available.
dvar3_array	operator+ (const dvariable &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator+ (double m1, const dvar3_array &m2)
	Description not yet available.
dvar_vector	operator- (double x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator- (const dvar_vector &t1, double x)
	Description not yet available.
dvar_vector	operator- (const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator- (const prevariable &x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator- (const dvar_vector &t1, const prevariable &x)
	Description not yet available.
dvar_vector	operator- (const dvector &t1, const prevariable &x)
	Description not yet available.
dvector	operator- (double x, const dvector &t1)
	Description not yet available.
dvector	operator- (const dvector &t1, double x)
	Description not yet available.
dvector	operator- (const dvector &t1)
dvar_matrix	operator- (const dvariable &x, const dmatrix &m)
	Description not yet available.
dmatrix	operator- (double x, const dmatrix &m)
	Description not yet available.
dmatrix	operator- (const dmatrix &m, double d)
	Description not yet available.
d3_array	operator- (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	operator- (const d3_array &m1, double m2)
	Description not yet available.
d3_array	operator- (double m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator- (const dvar3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	operator- (const d3_array &m1, const dvar3_array &m2)
	Description not yet available.
dvar3_array	operator- (const dvar3_array &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator- (const dvar3_array &m1, const dvariable &m2)
	Description not yet available.
dvar3_array	operator- (const dvariable &m1, const d3_array &m2)
	Description not yet available.
dvar3_array	operator- (const dvariable &m1, const dvar3_array &m2)
dvar3_array	operator- (double m1, const dvar3_array &m2)
	Description not yet available.
dmatrix	operator- (const dmatrix &m)
	Description not yet available.
dvar_matrix	operator- (const dvar_matrix &m)
	Description not yet available.
dvar_vector	operator/ (double x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator/ (const dvar_vector &t1, double x)
	Description not yet available.
dvar_vector	operator/ (const prevariable &x, const dvar_vector &t1)
	Description not yet available.
dvar_vector	operator/ (const dvar_vector &t1, const prevariable &x)
	Description not yet available.
dvector	operator/ (double x, const dvector &t1)
	Description not yet available.
dvector	operator/ (const dvector &t1, double x)
	Description not yet available.
dmatrix	operator/ (const dmatrix &m, double d)
	Description not yet available.
dmatrix	operator/ (double d, const dmatrix &m)
	Description not yet available.
dvar_matrix	operator/ (const dvar_matrix &m, const prevariable &x)
	Description not yet available.
dvar_matrix	operator/ (const dmatrix &m, const prevariable &x)
	Description not yet available.
dvar_matrix	operator/ (const dvar_matrix &m, double x)
	Description not yet available.
dvar_matrix	operator/ (double x, const dvar_matrix &m)
	Description not yet available.
dvar_matrix	operator/ (const prevariable &x, const dvar_matrix &m)
	Description not yet available.
d3_array	operator/ (const d3_array &m1, double m2)
	Description not yet available.
d3_array	operator/ (double m2, const d3_array &m1)
dvar3_array	operator/ (const prevariable &m2, const dvar3_array &m1)
	Description not yet available.
dvar3_array	operator/ (const prevariable &m2, const d3_array &m1)
	Description not yet available.
dvar3_array	operator/ (double m2, const dvar3_array &m1)
	Description not yet available.
dvar3_array	operator/ (const dvar3_array &m1, const prevariable &m2)
	Description not yet available.
dvar3_array	operator/ (const d3_array &m1, const prevariable &m2)
	Description not yet available.
dvar3_array	operator/ (const dvar3_array &m1, double m2)
	Description not yet available.
d4_array	operator/ (const d4_array &m, double d)
	Description not yet available.
d4_array	operator/ (double d, const d4_array &m)
	Description not yet available.
dvar4_array	operator/ (const d4_array &m, const prevariable &d)
	Description not yet available.
dvar4_array	operator/ (const dvar4_array &m, double d)
	Description not yet available.
dvar4_array	operator/ (const dvar4_array &m, const prevariable &d)
	Description not yet available.
dvar5_array	operator/ (const d5_array &m, const prevariable &d)
	Description not yet available.
dvar5_array	operator/ (const dvar5_array &m, double d)
	Description not yet available.
dvar5_array	operator/ (const dvar5_array &m, const prevariable &d)
	Description not yet available.
d5_array	operator/ (const d5_array &m, double d)
	Description not yet available.
d6_array	operator/ (const d6_array &m, double d)
	Description not yet available.
dvar6_array	operator/ (const d6_array &m, const prevariable &d)
	Description not yet available.
dvar6_array	operator/ (const dvar6_array &m, double d)
	Description not yet available.
dvar6_array	operator/ (const dvar6_array &m, const prevariable &d)
	Description not yet available.
d7_array	operator/ (const d7_array &m, double d)
	Description not yet available.
dvar7_array	operator/ (const d7_array &m, const prevariable &d)
	Description not yet available.
dvar7_array	operator/ (const dvar7_array &m, double d)
	Description not yet available.
dvar7_array	operator/ (const dvar7_array &m, const prevariable &d)
	Description not yet available.
int	operator< (double v0, const prevariable &v1)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dmatrix &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const dmatrix &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const d3_array &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const d3_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvar3_array &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const dvar3_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const ivector &z)
	Insertion operator for ivector z.
uostream &	operator<< (const uostream &ostr, const ivector &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const lvector &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const lvector &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvector &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const dvector &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvar_vector &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const dvar_vector &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvar_matrix &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const dvar_matrix &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const prevariable &z)
	Description not yet available.
uostream &	operator<< (const uostream &ostr, const prevariable &z)
	Description not yet available.
ostream &	operator<< (const ostream &, preshowpoint)
	Description not yet available.
ostream &	operator<< (const ostream &, prefixed)
	Description not yet available.
ostream &	operator<< (const ostream &, prescientific)
	Description not yet available.
ostream &	operator<< (const ostream &istr, const imatrix &z)
	Description not yet available.
ostream &	operator<< (const ostream &istr, const i3_array &z)
	Description not yet available.
prevariable &	operator<< (const prevariable &v1, const prevariable &v2)
	Description not yet available.
dvar_vector &	operator<< (const dvar_vector &v1, const dvar_vector &v2)
	Description not yet available.
dvar_matrix &	operator<< (const dvar_matrix &v1, const dvar_matrix &v2)
	Description not yet available.
ostream &	operator<< (const ostream &s, const ptr_vector &v)
	Description not yet available.
uostream &	operator<< (const uostream &, const dfsdmat &)
	Description not yet available.
ostream &	operator<< (const ostream &s, const fmm_control &fmc)
	<< operator to write function minimizer details
ostream &	operator<< (const ostream &, const dvar_matrix_position &)
ostream &	operator<< (const ostream &ostr, const d4_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const d5_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const d6_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvar4_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ostr, const dvar5_array &z)
	Outputs dvar5_array z.
ostream &	operator<< (const ostream &ostr, const dvar6_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &istr, const i5_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &istr, const i4_array &z)
	Description not yet available.
ostream &	operator<< (const ostream &ofs, const banded_symmetric_dmatrix &S)
	Description not yet available.
ostream &	operator<< (const ostream &ofs, const banded_symmetric_dvar_matrix &S)
	Description not yet available.
ostream &	operator<< (const ostream &ofs, const banded_lower_triangular_dmatrix &S)
	Description not yet available.
ostream &	operator<< (const ostream &ofs, const banded_lower_triangular_dvar_matrix &S)
	Description not yet available.
ostream &	operator<< (const ostream &, const pre_column_print &)
	Description not yet available.
ostream &	operator<< (const ostream &, const pre_zero_print &)
	Description not yet available.
int	operator<= (double v0, const prevariable &v1)
	Description not yet available.
int	operator== (double v0, const prevariable &v1)
	Description not yet available.
int	operator> (double v0, const prevariable &v1)
	Description not yet available.
int	operator>= (double v0, const prevariable &v1)
	Description not yet available.
istream &	operator>> (const istream &istr, const dmatrix &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const dmatrix &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const d3_array &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const d3_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar3_array &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const dvar3_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const ivector &z)
	Extraction operator for ivector _z.
uistream &	operator>> (const uistream &istr, const ivector &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const lvector &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const lvector &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvector &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const dvector &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar_vector &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const dvar_vector &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar_matrix &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const dvar_matrix &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const prevariable &z)
	Description not yet available.
uistream &	operator>> (const uistream &istr, const prevariable &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const imatrix &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const i3_array &z)
	Description not yet available.
istream &	operator>> (const istream &s, const ptr_vector &v)
uistream &	operator>> (const uistream &, const dfsdmat &)
	Description not yet available.
istream &	operator>> (const istream &istr, const d4_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const d5_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const d6_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar4_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar5_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const dvar6_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const i5_array &z)
	Description not yet available.
istream &	operator>> (const istream &istr, const i4_array &z)
	Description not yet available.
int	option_match (int argc, char argv[], const char string)
	Checks if the program has been invoked with a particular command line argument ("string").
int	option_match (int argc, char argv[], const char string, int &nopt)
	Checks if the program has been invoked with a particular command line argument ("string").
int	option_match (char s, const char string, int &nopt)
	Search for option in _s and returns number of option args in _nopt.
int	option_match (char s, const char string)
	Search for option in _s.
dmatrix	orthpoly (int n, int deg)
	Description not yet available.
dmatrix	orthpoly (int n, int deg, int skip)
	Description not yet available.
d4_array	orthpoly2 (int n, int m, int d1, int d2)
	Description not yet available.
dmatrix	orthpoly_constant_begin (int n, int deg, int nconst)
	Description not yet available.
dmatrix	orthpoly_constant_begin_end (int n, int deg, int nconst_begin, int enddeg, int nconst_end)
	Description not yet available.
dmatrix	outer_prod (const dvector &t1, const dvector &t2)
	Description not yet available.
dvar_matrix	outer_prod (const dvar_vector &t1, const dvar_vector &t2)
	Description not yet available.
dvar_matrix	outer_prod (const dvector &t1, const dvar_vector &t2)
	Description not yet available.
dvar_matrix	outer_prod (const dvar_vector &t1, const dvector &t2)
	Description not yet available.
dvar_vector	pareto_density (const dvar_vector &_y, const prevariable &alpha, const prevariable &xm)
dvariable	pareto_density (const prevariable &_y, const prevariable &alpha, const prevariable &xm)
dvar_vector	posfun (const dvar_vector &x, double eps, const prevariable &pen)
	Description not yet available.
dvariable	posfun (const dvariable &x, const double eps, const prevariable &pen)
	Retuns a positive function of the argument and sets a penalty for .
double	posfun (const double &x, const double eps, const double &_pen)
	Retuns a positive function of the argument and sets a penalty for .
dvariable	posfun2 (const dvariable &x, const double eps, const prevariable &pen)
	Retuns a positive function of the argument and sets a penalty for .
double	posfun2 (const double &x, const double eps, const double &_pen)
	Retuns a positive function of the argument and sets a penalty for .
dvar_matrix	positive_definite_matrix (const dvar_matrix &MM, double eps, dvariable &fpen)
	Description not yet available.
dvector	pow (const dvector &t1, double)
	Description not yet available.
dvector	pow (const dvector &t1, int)
	Description not yet available.
dvector	pow (double, const dvector &t1)
	Description not yet available.
ivector	pow (const ivector &v1, int x)
	Returns integer vector with all the base elements in ivector v1 base raised to the power exponent x.
ivector	pow (int x, const ivector &v1)
	Returns integer vector with base x raised with all the elements in exponent ivector x.
dvar_vector	pow (const dvar_vector &, const dvar_vector &t1)
	Description not yet available.
dvar_vector	pow (const dvar_vector &, const dvector &t1)
	raise v1 to the power v2.
dvar_vector	pow (const dvector &, const dvar_vector &t1)
dvector	pow (const dvector &, const dvector &t1)
	Description not yet available.
dvar_vector	pow (const dvar_vector &t1, double)
	Description not yet available.
dvar_vector	pow (const dvar_vector &t1, int)
	Description not yet available.
dvar_vector	pow (const dvar_vector &t1, const prevariable &)
	Description not yet available.
dvar_vector	pow (const dvector &t1, const prevariable &)
	Description not yet available.
dvar_vector	pow (const prevariable &, const dvar_vector &t1)
	Description not yet available.
dmatrix	pow (const dmatrix &m, double e)
	Description not yet available.
dmatrix	pow (const dmatrix &m, int e)
	Description not yet available.
dvar_matrix	pow (const dvar_matrix &m, double e)
	Description not yet available.
dvar_matrix	pow (const dvar_matrix &m, const prevariable &e)
	Description not yet available.
dvar_matrix	pow (const dmatrix &m, const prevariable &e)
	Description not yet available.
dvar_matrix	pow (const dvar_matrix &m, int e)
	Description not yet available.
d3_array	pow (const d3_array &x, int e)
	Description not yet available.
dvar3_array	pow (const dvar3_array &x, int e)
	Description not yet available.
double	randn (const random_number_generator &rng)
	Normal number generator.
double	randnegbinomial (double mu, double tau, const random_number_generator &rng)
	Description not yet available.
double	randpoisson (double lambda, const random_number_generator &rng)
	Poisson random deviates.
double	randu (const random_number_generator &rng)
	Uniform random number generator.
dvariable	regression (const dvector &obs, const dvar_vector &pred)
	Description not yet available.
double	regression (const dvector &obs, const dvector &pred)
	Description not yet available.
void	report_gradstack_flag (void)
	Description not yet available.
void	reset_gradient_stack (void)
	Rewind buffer.
long int	reset_gs_stack (void)
void	reset_gs_stack (long int)
void *	restore_ad_pointer (void)
	Description not yet available.
banded_lower_triangular_dmatrix	restore_banded_lower_triangular_dvar_matrix_derivatives (const dvar_matrix_position &pos)
	Description not yet available.
banded_lower_triangular_dmatrix	restore_banded_lower_triangular_dvar_matrix_value (const dvar_matrix_position &pos)
	Description not yet available.
banded_symmetric_dmatrix	restore_banded_symmetric_dvar_matrix_value (const dvar_matrix_position &mpos)
	Description not yet available.
banded_symmetric_dmatrix	restore_bounded_symmetric_dvar_matrix_derivatives (const dvar_matrix_position &pos)
	Description not yet available.
d3_array_position	restore_d3_array_position (void)
	Description not yet available.
d3_array	restore_d3_array_value (const d3_array_position &)
	Description not yet available.
dmatrix_position	restore_dmatrix_position (void)
	Description not yet available.
dmatrix	restore_dmatrix_value (const dmatrix_position &)
	Description not yet available.
double	restore_double_value (void)
	Description not yet available.
dmatrix	restore_dvar_matrix_der_nozero (const dvar_matrix_position &pos)
	Description not yet available.
dvector	restore_dvar_matrix_derivative_column (const dvar_matrix_position &pos, const int &ii)
	Description not yet available.
dvector	restore_dvar_matrix_derivative_row (const dvar_matrix_position &pos, const int &ii)
	Description not yet available.
dmatrix	restore_dvar_matrix_derivatives (const dvar_matrix_position &pos)
	Description not yet available.
dmatrix	restore_dvar_matrix_derivatives (void)
dvector	restore_dvar_matrix_derivatives (const dvar_matrix_position &pos, const int &ii)
dvar_matrix_position	restore_dvar_matrix_position (void)
	Description not yet available.
dmatrix	restore_dvar_matrix_value (const dvar_matrix_position &mpos)
	Description not yet available.
dvector	restore_dvar_vector_der_nozero (const dvar_vector_position &tmp)
	Description not yet available.
dvector	restore_dvar_vector_derivatives (void)
dvector	restore_dvar_vector_derivatives (const dvar_vector_position &tmp)
	Description not yet available.
dvar_vector_position	restore_dvar_vector_position (void)
	Description not yet available.
dvector	restore_dvar_vector_value (const dvar_vector_position &tmp)
	Restores the size, address, and value information for a dvar_vector.
dvector_position	restore_dvector_position (void)
	Description not yet available.
dvector	restore_dvector_value (const dvector_position &)
	Restores the size, address, and value information for a dvector.
int	restore_int_value (void)
	Description not yet available.
ivector_position	restore_ivector_position (void)
	Description not yet available.
ivector	restore_ivector_value (const ivector_position &)
	Description not yet available.
lmatrix_position	restore_lmatrix_position (void)
lmatrix	restore_lmatrix_value (const lmatrix_position &)
void *	restore_pointer_value (void)
	Description not yet available.
double	restore_prevariable_derivative (const prevariable_position &pre)
	Description not yet available.
double	restore_prevariable_derivative (void)
	Description not yet available.
prevariable_position	restore_prevariable_position (void)
	Description not yet available.
double	restore_prevariable_value (void)
	Description not yet available.
void	RETURN_ARRAYS_DECREMENT (void)
	Decrements gradient_structure::RETURN_ARRAYS_PTR.
void	RETURN_ARRAYS_INCREMENT (void)
	Increments gradient_structure::RETURN_ARRAYS_PTR.
hs_smatrix *	return_choleski_decomp (dcompressed_triplet &st)
dvar_hs_smatrix *	return_choleski_decomp (dvar_compressed_triplet &st)
dvector	return_choleski_decomp_solve (dcompressed_triplet &dct, dvector &eps)
dvector	return_choleski_factor_solve (hs_smatrix *PL, dvector &eps)
dvar_vector	return_choleski_factor_solve (dvar_hs_smatrix *PL, dvector &eps)
double	robust_normal_logistic_mixture_deviate (double x, double spread=3.0)
	Description not yet available.
double	robust_normal_mixture_deviate (double x, double spread=3.0)
	Description not yet available.
dvariable	robust_normal_mixture_deviate (const prevariable &x, double spread=3.0)
	Description not yet available.
dvariable	robust_regression (const dvector &obs, const dvar_vector &pred, double a=0.7)
	Description not yet available.
dvariable	robust_regression (const dvector &obs, const dvar_vector &pred, const dvariable &cutoff)
	Description not yet available.
dvariable	robust_regression_fixed (const dvector &obs, const dvar_vector &pred, double a=0.7)
dvector	row (const dmatrix &m, int j)
	Description not yet available.
dvar_vector	row (const dvar_matrix &m, int j)
	Description not yet available.
dmatrix	row_vector (const dvector &)
	Description not yet available.
dvar_matrix	row_vector (const dvar_vector &)
	Description not yet available.
dvar_vector	rowsum (const dvar_matrix &)
	Description not yet available.
dvector	rowsum (const dmatrix &)
	Description not yet available.
ivector	rowsum (const imatrix &)
	Description not yet available.
void	save_ad_pointer (void *)
	Description not yet available.
void	save_dmatrix_derivatives (const dvar_matrix_position &pos, double x, const int &i, int &j)
	Description not yet available.
void	save_double_derivative (double x, const prevariable_position &pos)
	Description not yet available.
void	save_double_value (double x)
	Description not yet available.
int	save_identifier_string (const char *)
	Writes a gradient stack verification string.
void	save_int_value (int x)
	Description not yet available.
void	save_pointer_value (void *ptr)
	Description not yet available.
void	send_dv3_to_master (const dvar3_array &v)
void	set_gradstack_flag (char *str, int i, int j)
	Description not yet available.
void	set_gradstack_flag (char *str)
	Description not yet available.
void	set_value (const dvar_matrix &x, const dvar_vector &v, const int &_ii, double s)
	Description not yet available.
void	set_value (const dvar_matrix &x, const dvar_vector &v, const int &ii, double fmin, double fmax, const dvariable &fpen, double s)
	Description not yet available.
void	set_value (const dvar_vector &x, const dvar_vector &v, const int &_ii, double s)
	Description not yet available.
void	set_value (const dvar_vector &_x, const dvar_vector &v, const int &_ii, double fmin, double fmax, const dvariable &fpen, double s)
	Description not yet available.
void	set_value (const prevariable &x, const dvar_vector &v, const int &ii)
	Description not yet available.
void	set_value (const prevariable &x, const dvar_vector &v, const int &ii, double s)
	Description not yet available.
void	set_value (const dvar_vector &x, const dvar_vector &v, const int &ii)
	Description not yet available.
void	set_value (const prevariable &_x, const dvar_vector &v, const int &_ii, double fmin, double fmax, const dvariable &fpen, double s)
	Description not yet available.
void	set_value (const prevariable &x, const dvar_vector &v, const int &ii, double fmin, double fmax, const dvariable &fpen)
	Description not yet available.
void	set_value (const dvar_vector &x, const dvar_vector &v, const int &ii, double fmin, double fmax, const dvariable &fpen)
	Description not yet available.
void	set_value (const dvar_matrix &x, const dvar_vector &v, const int &ii)
	Description not yet available.
void	set_value (const dvar_matrix &x, const dvar_vector &v, const int &ii, double fmin, double fmax, const dvariable &fpen)
	Description not yet available.
void	set_value (dvar3_array &x, const dvar_vector &v, const int &ii)
	Description not yet available.
void	set_value (dvar3_array &x, const dvar_vector &v, const int &ii, double fmin, double fmax, const dvariable &fpen)
	Description not yet available.
void	set_value_exp (const prevariable &_x, const dvar_vector &v, const int &_ii, double fmin, double fmax, const dvariable &fpen, double s)
void	set_value_inv (const dvar_matrix &x, const dvector &v, const int &ii, double s)
	Description not yet available.
void	set_value_inv (const dvar_matrix &x, const dvector &v, const int &ii, double fmin, double fmax, double s)
	Description not yet available.
void	set_value_inv (const dvar_vector &x, const dvector &_v, const int &_ii, double s)
	Description not yet available.
void	set_value_inv (const dvar_vector &x, const dvector &_v, const int &_ii, double fmin, double fmax, double s)
	Description not yet available.
void	set_value_inv (const dvar_matrix &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const prevariable &x, const dvector &v, const int &ii, double s)
	Description not yet available.
void	set_value_inv (const prevariable &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const dvar_matrix &u, const dvector &x, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const dvar3_array &u, const dvector &x, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const dvar3_array &u, const dvector &x, const int &ii)
	Description not yet available.
void	set_value_inv (double x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const prevariable &x, const dvector &_v, const int &_ii, double fmin, double fmax, double s)
	Description not yet available.
void	set_value_inv (const prevariable &u, const dvector &x, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (double u, const dvector &x, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const dvector &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const dvar_vector &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const dvar_vector &x, const dvector &v, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const dvector &x, const dvector &v, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const dmatrix &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const dmatrix &x, const dvector &v, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv (const d3_array &x, const dvector &v, const int &ii)
	Description not yet available.
void	set_value_inv (const d3_array &x, const dvector &v, const int &ii, double fmin, double fmax)
	Description not yet available.
void	set_value_inv_exp (const prevariable &x, const dvector &_v, const int &_ii, double fmin, double fmax, double s)
void	set_value_inv_partial (const dvector &x, const dvector &v, const int &ii, int n)
	Description not yet available.
void	set_value_inv_partial (const dvector &x, const dvector &v, const int &ii, int n, double fmin, double fmax)
	Description not yet available.
void	set_value_inv_partial (const dmatrix &x, const dvector &v, const int &ii, int n)
void	set_value_inv_partial (const dvar_matrix &x, const dvector &v, const int &ii, int n)
	Description not yet available.
void	set_value_inv_partial (const d3_array &x, const dvector &v, const int &ii, int n)
void	set_value_inv_partial (const dvar_vector &x, const dvector &v, const int &ii, int n)
	Description not yet available.
void	set_value_inv_partial (const dvar_vector &x, const dvector &v, const int &ii, int n, double fmin, double fmax)
	Description not yet available.
void	set_value_partial (const dvar_vector &x, const dvar_vector &v, const int &ii, int n)
	Description not yet available.
void	set_value_partial (const dvar_vector &x, const dvar_vector &v, const int &ii, int n, double fmin, double fmax, const dvariable &fpen)
	Description not yet available.
void	set_value_partial (const dvar_matrix &x, const dvar_vector &v, const int &ii, int n)
	Description not yet available.
void	set_value_partial (dvar3_array &x, const dvar_vector &v, const int &ii, int n)
ostream &	setfixed (const ostream &s)
prefixed	setfixed (void)
	Description not yet available.
ostream &	setscientific (const ostream &s)
prescientific	setscientific (void)
	Description not yet available.
preshowpoint	setshowpoint (void)
	Description not yet available.
double	sfabs (double t1)
	Description not yet available.
dvector	sfabs (const dvector &t1)
	Description not yet available.
double	sgamma (double a, const random_number_generator &_rng)
	Description not yet available.
ivector	sgn (const dvector &)
	Description not yet available.
ivector	sgn (const dvar_vector &)
	Description not yet available.
double	sigmoid (double t1)
	Description not yet available.
dvector	sin (const dvector &t1)
	Description not yet available.
dvar_vector	sin (const dvar_vector &t1)
	Description not yet available.
dmatrix	sin (const dmatrix &m)
	Description not yet available.
dvar_matrix	sin (const dvar_matrix &m)
	Description not yet available.
d3_array	sin (const d3_array &m)
	Description not yet available.
dvar3_array	sin (const dvar3_array &m)
	Description not yet available.
sing_val_decomp	singval_decomp (const dmatrix &_a)
	Singular value decomposition.
dvector	sinh (const dvector &t1)
	Description not yet available.
dvar_vector	sinh (const dvar_vector &t1)
	Description not yet available.
int	size_count (const dvar_vector &x)
	Description not yet available.
int	size_count (const dvar_matrix &x)
	Description not yet available.
int	size_count (const dvar3_array &x)
	Description not yet available.
int	size_count (const dvar4_array &x)
	Description not yet available.
int	size_count (const dvector &x)
	Description not yet available.
int	size_count (const dmatrix &x)
	Description not yet available.
int	size_count (const d3_array &x)
	Description not yet available.
int	size_count (const d4_array &x)
	Description not yet available.
int	size_count_partial (const dvar_vector &x, int)
	Description not yet available.
int	size_count_partial (const dvar_matrix &x, int)
	Description not yet available.
int	size_count_partial (const dvar3_array &x, int)
	Description not yet available.
int	size_count_partial (const dvector &x, int)
	Description not yet available.
int	size_count_partial (const dmatrix &x, int)
	Description not yet available.
int	size_count_partial (const d3_array &x, int)
	Description not yet available.
void	slave_gradcalc (void)
int	smbfct_ (int neqns, ivector &xadj, ivector &adjncy, ivector &perm, ivector &invp, ivector &xlnz, int maxlnz, ivector &xnzsub, ivector &nzsub, int maxsub, ivector &rchlnk, ivector &mrglnk, ivector &marker, int flag__)
dvar_vector	solve (const dvar_matrix &aa, const dvar_vector &z)
	Solve a linear system using LU decomposition.
dvar_vector	solve (const dvar_matrix &aa, const dvar_vector &z, prevariable &ln_unsigned_det, const prevariable &sign)
	Solve a linear sysgem using LU decomposition.
dvector	solve (const dmatrix &aa, const dvector &z)
	Solve a linear system using LU decomposition.
dvector	solve (const dmatrix &aa, const dvector &z, const double &ln_unsigned_det, double &sign)
	Solve a linear system using LU decomposition.
dvar_matrix	solve (const dvar_matrix &aa, const dvar_matrix &zz)
dmatrix	solve (const banded_symmetric_dmatrix &m, const dmatrix &M)
	Description not yet available.
dmatrix	solve (const dmatrix &m, const dmatrix &M)
	/param aa /param tz
dvector	solve (const banded_symmetric_dmatrix &m, const dvector &v)
	Description not yet available.
dvar_vector	solve (const banded_lower_triangular_dvar_matrix &m, const dvar_vector &v)
	Description not yet available.
dvector	solve (const banded_lower_triangular_dmatrix &m, const dvector &v)
	Description not yet available.
dvector	solve (const lower_triangular_dmatrix &M, const dvector &v)
	Description not yet available.
dvector	solve (const dcompressed_triplet &, const dmatrix &, const dvector &)
dvector	solve (const dcompressed_triplet &, const dvector &, const hs_symbolic &, int &ierr)
dvector	solve (const dcompressed_triplet &, const dvector &, const hs_symbolic &)
dvector	solve (const dcompressed_triplet &, const dmatrix &, const dvector &, const hs_symbolic &)
dvector	solve_trans (const banded_lower_triangular_dmatrix &m, const dvector &v)
	Description not yet available.
dvector	solve_trans (const lower_triangular_dmatrix &M, const dvector &v)
	Description not yet available.
dvar_vector	solve_trans (const banded_lower_triangular_dvar_matrix &M, const dvector &y)
	Description not yet available.
dvar_vector	sort (const dvar_vector &, int NSTACK=60)
dvector	sort (const dvector &, int NSTACK=60)
	Quicksort.
ivector	sort (const ivector &, int NSTACK=60)
	Quicksort.
dvector	sort (const dvector &, const ivector &index, int NSTACK=60)
	Quicksort.
ivector	sort (const ivector &, const ivector &index, int NSTACK=60)
	Quicksort.
dmatrix	sort (const dmatrix &, int column, int NSTACK=60)
	Description not yet available.
imatrix	sort (const imatrix &, int column, int NSTACK=60)
	Description not yet available.
void	spdll_exit (int)
dvector	sqr (const dvector &t1)
	Description not yet available.
dvar_vector	sqr (const dvar_vector &t1)
	Description not yet available.
dmatrix	sqr (const dmatrix &m)
	Description not yet available.
dvar_matrix	sqr (const dvar_matrix &m)
	Description not yet available.
d3_array	sqr (const d3_array &m)
	Description not yet available.
dvar3_array	sqr (const dvar3_array &m)
	Description not yet available.
dvector	sqrt (const dvector &t1)
	Description not yet available.
dvar_vector	sqrt (const dvar_vector &t1)
	Description not yet available.
dmatrix	sqrt (const dmatrix &m)
	Description not yet available.
dvar_matrix	sqrt (const dvar_matrix &m)
	Description not yet available.
d3_array	sqrt (const d3_array &m)
	Description not yet available.
dvar3_array	sqrt (const dvar3_array &m)
	Description not yet available.
d4_array	sqrt (const d4_array &x)
	Description not yet available.
dvar4_array	sqrt (const dvar4_array &x)
	Description not yet available.
d5_array	sqrt (const d5_array &x)
dvar5_array	sqrt (const dvar5_array &x)
	Description not yet available.
ivector	square (const ivector &x)
double	square (double x)
	Square of a number; constant object.
dvector	square (const dvector &x)
	Square of elements in a vector; constant vector object.
dmatrix	square (const dmatrix &x)
	Square of a elements in a matrix; constant matrix object.
d3_array	square (const d3_array &x)
	Square of elements in a 3-dimensional array; constant 3-dimensionsal array.
dvariable &	square (const prevariable &x)
	Description not yet available.
dvar_vector	square (const dvar_vector &x)
	Description not yet available.
dvar_matrix	square (const dvar_matrix &x)
	Description not yet available.
dvar3_array	square (const dvar3_array &x)
	Description not yet available.
double	std_dev (const dvector &)
	Description not yet available.
dvariable	std_dev (const dvar_vector &)
	Description not yet available.
int	sub_unallocated (const dvar_vector &m)
	Description not yet available.
int	sub_unallocated (const dvar_matrix &m)
	Description not yet available.
int	sub_unallocated (const dvar3_array &m)
	Description not yet available.
int	sub_unallocated (const dvar4_array &m)
	Description not yet available.
int	sub_unallocated (const dvar5_array &m)
	Description not yet available.
int	sub_unallocated (const dvector &m)
	Description not yet available.
int	sub_unallocated (const dmatrix &m)
	Description not yet available.
int	sub_unallocated (const d3_array &m)
	Description not yet available.
int	sub_unallocated (const d4_array &m)
	Description not yet available.
int	sub_unallocated (const d5_array &m)
	Description not yet available.
int	sub_unallocated (const ivector &m)
	Description not yet available.
int	sub_unallocated (const imatrix &m)
	Description not yet available.
int	sub_unallocated (const i3_array &m)
	Description not yet available.
int	sub_unallocated (const i4_array &m)
	Description not yet available.
AD_LONG_INT	sum (const lvector &)
dvariable	sum (const dvar_vector &)
	Compute the sum of a variable type vector.
double	sum (const dvector &)
	Description not yet available.
int	sum (const ivector &)
	Return integer sum of all the elements in ivector v.
int	sum (const imatrix &)
	Description not yet available.
double	sum (const dmatrix &)
	Description not yet available.
double	sum (const d3_array &)
	Description not yet available.
double	sum (const d4_array &)
	Description not yet available.
double	sum (const d5_array &)
	Description not yet available.
double	sum (const d6_array &)
	Description not yet available.
double	sum (const d7_array &)
	Description not yet available.
dvariable	sum (const dvar_matrix &)
	Compute the sum of a variable type matrix.
dvariable	sum (const dvar3_array &)
	Description not yet available.
dvariable	sum (const dvar4_array &)
	Description not yet available.
dvariable	sum (const dvar5_array &)
	Description not yet available.
dvariable	sum (const dvar6_array &)
	Description not yet available.
dvariable	sum (const dvar7_array &)
	Description not yet available.
double	sumsq (const d3_array &)
dvariable	sumsq (const dvar3_array &m)
double	sumsq (const banded_symmetric_dmatrix &B)
dvariable	sumsq (const banded_symmetric_dvar_matrix &B)
int	sumsq (const ivector &v)
dmatrix	symmetrize (const dmatrix &m1)
	Description not yet available.
dvar_matrix	symmetrize (const dvar_matrix &m1)
	Description not yet available.
dmatrix	symmetrize (const lower_triangular_dmatrix &M)
	Description not yet available.
dvector	tan (const dvector &t1)
	Description not yet available.
dvar_vector	tan (const dvar_vector &t1)
	Description not yet available.
dmatrix	tan (const dmatrix &m)
	Description not yet available.
dvar_matrix	tan (const dvar_matrix &m)
	Description not yet available.
d3_array	tan (const d3_array &m)
	Description not yet available.
dvar3_array	tan (const dvar3_array &m)
	Description not yet available.
dvector	tanh (const dvector &t1)
	Description not yet available.
dvar_vector	tanh (const dvar_vector &t1)
	Description not yet available.
dvar_matrix	tensor_prod (const dvar_matrix &a, const dvar_matrix &b)
	The tensor product of two dvar_matrixes.
void	test_the_pointer (void)
void	tracing_message (int traceflag, const char *s)
	Description not yet available.
void	tracing_message (int traceflag, const char s, int pn)
	Description not yet available.
void	tracing_message (int traceflag, const char s, double pd)
	Description not yet available.
void	tracing_message (int traceflag, const char *s, double d)
	Description not yet available.
dmatrix	trans (const dmatrix &m1)
	Transpose of a matrix; constant objects.
imatrix	trans (const imatrix &m1)
	Description not yet available.
dvar_matrix	use_shape (const dvar_matrix &m)
	Description not yet available.
dmatrix	use_shape (const dmatrix &m)
	Description not yet available.
double &	value (const prevariable &v1)
dmatrix	value (const dvar_matrix &m)
	Description not yet available.
d3_array	value (const dvar3_array &a)
	Description not yet available.
banded_symmetric_dmatrix	value (const banded_symmetric_dvar_matrix &v)
	Description not yet available.
double	var (const dvector &)
	Description not yet available.
dvariable	var (const dvar_vector &)
	Description not yet available.
dvector	VEC (const dmatrix &)
	The VEC operator concatenates the columns of matrix M into a column vector.
dvar_vector	VEC (const dvar_matrix &)
	The VEC operator concatenates the columns of matrix M into a column vector.
void	verify_identifier_string (const char *)
	Verifies gradient stack string.
char	which_library ()
	Get ADMB library mode.
pre_zero_print	zero_print (const dvector &v)
	Description not yet available.
Variables
exitptr	ad_exit
int	ad_kill_flag
fptr	ad_printf
int	just_to_link_fvar1

Detailed Description

AUTODIF classes.

Class definitions for reverse mode automatic differentiation. Function prototypes for math functions. Macro definitions.

Definition in file fvar.hpp.

Define Documentation

#define __GNU__

Definition at line 127 of file fvar.hpp.

#define __NUMBERVECTOR__

Definition at line 91 of file fvar.hpp.

#define __USE_IOSTREAM__

Definition at line 104 of file fvar.hpp.

#define _VECTOR_SHAPE

Definition at line 443 of file fvar.hpp.

#define AD_LONG_INT long int

Definition at line 119 of file fvar.hpp.

Referenced by lvector::allocate(), colsum(), lvector::initialize(), lvector::lvector(), and lvector::read_from().

#define AD_SET_DERIVATIVES1	(	depvar,
		indvar,
		df
	)

Value:

gradient_structure::GRAD_STACK1->set_gradient_stack2(default_evaluation2,\
       &(value(depvar)), &(value(indvar)),df);

Definition at line 8572 of file fvar.hpp.

#define AD_SET_DERIVATIVES2	(	depvar,
		indvar1,
		df1,
		indvar2,
		df2
	)

Value:

gradient_structure::GRAD_STACK1->set_gradient_stack(default_evaluation3,\
       &(value(depvar)), &(value(indvar1)),df1,&(value(indvar2)),df2);

Definition at line 8576 of file fvar.hpp.

#define AD_SET_DERIVATIVES3	(	depvar,
		indvar1,
		df1,
		indvar2,
		df2,
		indvar3,
		df3
	)

Value:

gradient_structure::GRAD_STACK1->set_gradient_stack(default_evaluation3ind,\
      &(value(depvar)), &(value(indvar1)),df1,&(value(indvar2)),df2, \
      &(value(indvar3)),df3);

Definition at line 8580 of file fvar.hpp.

#define AD_SET_DERIVATIVES4	(	depvar,
		indvar1,
		df1,
		indvar2,
		df2,
		indvar3,
		df3,
		indvar4,
		df4
	)

Value:

gradient_structure::GRAD_STACK1->set_gradient_stack(default_evaluation4ind,\
      &(value(depvar)), &(value(indvar1)),df1,&(value(indvar2)),df2, \
      &(value(indvar3)),df3, \
      &(value(indvar4)),df4);

Definition at line 8585 of file fvar.hpp.

#define ADJOINT_CODE ( x ) gradient_structure::GRAD_STACK1->set_gradient_stack(x);

Definition at line 8592 of file fvar.hpp.

#define ADUNCONST	(	type,
		obj
	)	type & obj = (type&) _##obj;

Creates a shallow copy of obj that is not CONST.

Definition at line 96 of file fvar.hpp.

#define BEGIN_MINIMIZATION	(	nvar,
		objective_function,
		ind_vars,
		gradient,
		cntrl
	)

Value:

gradient_structure gs; \
while (cntrl.ireturn >= 0) \
{ \
  cntrl.fmin(objective_function,ind_vars,gradient ); \
  if (cntrl.ireturn > 0) \
  {

Definition at line 322 of file fvar.hpp.

#define END_MINIMIZATION	(	nvar,
		gradient
	)

Value:

gradcalc(nvar, gradient); \
  } \
}

Definition at line 330 of file fvar.hpp.

#define M_PI 3.14159265358979323846

Definition at line 53 of file fvar.hpp.

Referenced by dlnorm(), dnorm(), multifan(), nllLognormal(), nllLognormal2(), nllNormal(), and nllNormal2().

#define MFCL2_CONSTRUCTORS

Definition at line 98 of file fvar.hpp.

#define NO_DERIVS

Definition at line 136 of file fvar.hpp.

#define O_BINARY 0

Definition at line 125 of file fvar.hpp.

Referenced by test_smartlist::allocate(), fixed_smartlist::allocate(), fixed_smartlist2::allocate(), grad_stack::create_gradfile(), DF_FILE::DF_FILE(), dfsdmat::save(), and smartlist::smartlist().

#define USE_HIGHER_ARRAYS

Definition at line 112 of file fvar.hpp.

#define USE_VECTOR_SHAPE_POOL

Definition at line 71 of file fvar.hpp.

Typedef Documentation

typedef struct cs_symbolic css

Definition at line 9175 of file fvar.hpp.

typedef void(* exitptr)(int)

Definition at line 144 of file fvar.hpp.

typedef int(* fptr)(const char *format,...)

Definition at line 142 of file fvar.hpp.

Function Documentation

dvector acos ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 182 of file dvect6.cpp.

Referenced by acos().

dvar_vector acos ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 148 of file fvar_ar8.cpp.

void ad_begin_funnel ( void )

Description not yet available.

Parameters:

Definition at line 383 of file xgradclc.cpp.

Referenced by calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_funnel(), and calculate_importance_sample_shess().

int ad_chdir ( const char * s )

Description not yet available.

Parameters:

Definition at line 44 of file makesub.cpp.

Referenced by ad_comm::ad_comm(), and make_sub_directory().

void ad_getcd ( const adstring & _s )

Description not yet available.

Parameters:

Definition at line 57 of file makesub.cpp.

Referenced by ad_comm::ad_comm(), DF_FILE::DF_FILE(), grad_stack::grad_stack(), make_sub_directory(), and DF_FILE::~DF_FILE().

void ad_set_new_handler ( void )

Description not yet available.

Parameters:

Definition at line 46 of file newhand.cpp.

double* address ( const prevariable & v1 ) [inline]

Definition at line 1454 of file fvar.hpp.

int admax	(	int	i,
		int	j
	)		`[inline]`

Definition at line 8755 of file fvar.hpp.

Referenced by calculate_importance_sample(), calculate_laplace_approximation(), check_choleski_decomp(), choleski_decomp(), choleski_decomp_positive(), dfbltsolve(), dfcholeski_decomp_banded(), dfcholeski_decomp_banded_positive(), banded_symmetric_dmatrix::operator=(), and solve().

void ADMB_getcallindex ( int ) [inline]

Definition at line 9014 of file fvar.hpp.

void ADMB_getcallindex ( double ) [inline]

Definition at line 9018 of file fvar.hpp.

void ADMB_getcallindex ( const dvector & ) [inline]

Definition at line 9022 of file fvar.hpp.

void ADMB_getcallindex ( const dmatrix & ) [inline]

Definition at line 9026 of file fvar.hpp.

void ADMB_getcallindex ( const d3_array & ) [inline]

Definition at line 9030 of file fvar.hpp.

void ADMB_getcallindex ( const d4_array & ) [inline]

Definition at line 9034 of file fvar.hpp.

void ADMB_getcallindex ( const prevariable & ) [inline]

Definition at line 9038 of file fvar.hpp.

void ADMB_getcallindex ( const dvar_vector & ) [inline]

Definition at line 9042 of file fvar.hpp.

void ADMB_getcallindex ( const dvar_matrix & ) [inline]

Definition at line 9046 of file fvar.hpp.

void ADMB_getcallindex ( const dvar3_array & ) [inline]

Definition at line 9050 of file fvar.hpp.

void ADMB_getcallindex ( dvar4_array & ) [inline]

Definition at line 9054 of file fvar.hpp.

int admin	(	int	i,
		int	j
	)		`[inline]`

Definition at line 8763 of file fvar.hpp.

Referenced by choleski_decomp_trust_bound(), and solve_trans().

int allocated ( const ivector & v )

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a59.cpp.

int allocated ( const lvector & v )

Description not yet available.

Parameters:

Definition at line 26 of file fvar_a59.cpp.

int allocated ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 35 of file fvar_a59.cpp.

int allocated ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 44 of file fvar_a59.cpp.

int allocated ( const imatrix & v )

Description not yet available.

Parameters:

Definition at line 53 of file fvar_a59.cpp.

int allocated ( const dmatrix & v )

Definition at line 58 of file fvar_a59.cpp.

int allocated ( const dvar_matrix & v )

Description not yet available.

Parameters:

Definition at line 67 of file fvar_a59.cpp.

int allocated ( const i3_array & v )

Description not yet available.

Parameters:

Definition at line 76 of file fvar_a59.cpp.

int allocated ( const d3_array & v )

Description not yet available.

Parameters:

Definition at line 85 of file fvar_a59.cpp.

int allocated ( const dvar3_array & v )

Description not yet available.

Parameters:

Definition at line 94 of file fvar_a59.cpp.

int allocated ( const i4_array & v )

Description not yet available.

Parameters:

Definition at line 103 of file fvar_a59.cpp.

int allocated ( const d4_array & v )

Description not yet available.

Parameters:

Definition at line 112 of file fvar_a59.cpp.

int allocated ( const dvar4_array & v )

Description not yet available.

Parameters:

Definition at line 121 of file fvar_a59.cpp.

int allocated ( const d5_array & v )

Description not yet available.

Parameters:

Definition at line 130 of file fvar_a59.cpp.

int allocated ( const dvar5_array & v )

Description not yet available.

Parameters:

Definition at line 139 of file fvar_a59.cpp.

int allocated ( const d6_array & v )

Description not yet available.

Parameters:

Definition at line 148 of file fvar_a59.cpp.

int allocated ( const dvar6_array & v )

Description not yet available.

Parameters:

Definition at line 157 of file fvar_a59.cpp.

int allocated ( const d7_array & v )

Description not yet available.

Parameters:

Definition at line 166 of file fvar_a59.cpp.

int allocated ( const dvar7_array & v )

Description not yet available.

Parameters:

Definition at line 175 of file fvar_a59.cpp.

int allocated ( const dcompressed_triplet & t )

Definition at line 2855 of file hs_sparse.cpp.

int allocated ( const dvar_compressed_triplet & t )

Definition at line 2860 of file hs_sparse.cpp.

void arr_free ( double_and_int * varr )

Description not yet available.

Parameters:

Definition at line 241 of file newdar.cpp.

Referenced by dvar_vector::deallocate().

double_and_int* arr_new ( unsigned int sz )

Description not yet available.

Parameters:

Definition at line 82 of file newdar.cpp.

Referenced by dvar_vector::allocate(), and dvar_vector::dvar_vector().

ivector as_factor	(	const dvector &	v,
		const double	eps = `1.0e-6`
	)

Definition at line 34 of file factors.cpp.

dvector asin ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 168 of file dvect6.cpp.

Referenced by asin(), boundpin(), cmvbvu_(), and mvbvu_().

dvar_vector asin ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 132 of file fvar_ar8.cpp.

dvector atan ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 196 of file dvect6.cpp.

dvar_vector atan ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 314 of file fvar_a29.cpp.

dvector atan2	(	const dvector &	t1,
		const dvector &	t2
	)

dvector atan2	(	const dvector &	t1,
		double	t2
	)

dvector atan2	(	double	t1,
		const dvector &	t2
	)

dvar_vector atan2	(	const dvar_vector &	t1,
		const dvar_vector &	t2
	)

dvar_vector atan2	(	const dvar_vector &	t1,
		double	t2
	)

dvar_vector atan2	(	double	t1,
		const dvar_vector &	t2
	)

dvector atlas_solve_spd	(	const dmatrix &	M,
		const dvector &	x
	)

Referenced by laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), and laplace_approximation_calculator::do_newton_raphson_banded().

dvector atlas_solve_spd	(	const dmatrix &	M,
		const dvector &	x,
		int &	ierr
	)

dmatrix atlas_solve_spd	(	const dmatrix &	M,
		const dmatrix &	x
	)

dmatrix atlas_solve_spd_trans	(	const dmatrix &	M,
		const dmatrix &	x
	)

Referenced by laplace_approximation_calculator::default_calculations(), and laplace_approximation_calculator::default_calculations_check_derivatives().

dvariable avg	(	const prevariable &	x,
		const prevariable &	y
	)

Description not yet available.

Parameters:

Definition at line 24 of file fvar_fn2.cpp.

dvariable beta_deviate	(	const prevariable &	_a,
		const prevariable &	_b,
		const prevariable &	_x,
		double	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file vbetdev.cpp.

double beta_deviate	(	double	a,
		double	b,
		double	x,
		double	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file cbetdev.cpp.

double betacf	(	const double	a,
		const double	b,
		const double	x,
		int	MAXIT
	)

Incomplete beta function for constant objects.

Parameters:

a
b
x	Evaluates the continued fraction approximation for imcomplete beta function.

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 22 of file cbetacf.cpp.

Referenced by betai().

dvariable betacf	(	const dvariable &	_a,
		const dvariable &	_b,
		const dvariable &	_x,
		int	MAXIT
	)

Incomplete beta function for variable objects.

Evaluates the continued fraction for imcomplete beta function.

Parameters:

_a
_b
_x
MAXIT	Maximum number of iterations for the continued fraction approximation in betacf.

Returns:: Incomplete beta function

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 24 of file vbetacf.cpp.

dvariable betai	(	const dvariable	a,
		const dvariable	b,
		const dvariable	x,
		int	maxit
	)

Incomplete beta function for variable objects.

Id:: vbetai.cpp 789 2010-10-05 01:01:09Z johnoel

Parameters:

a
b
x
maxit	Maximum number of iterations for the continued fraction approximation in betacf.

Returns:: Incomplete beta function

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 21 of file vbetai.cpp.

double betai	(	const double	a,
		const double	b,
		const double	x,
		int	maxit
	)

Incomplete beta function for constant objects.

Id:: cbetai.cpp 789 2010-10-05 01:01:09Z johnoel

Parameters:

a
b
x
maxit	Maximum number of iterations for the continued fraction approximation in betacf.

Returns:: Incomplete beta function `

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 21 of file cbetai.cpp.

Referenced by inv_cumd_beta_stable().

prevariable& bounded_cumd_norm	(	const prevariable &	_x,
		double	beta
	)

Description not yet available.

Parameters:

Definition at line 273 of file vcumdist.cpp.

double bounded_cumd_norm	(	const double	x,
		double	beta
	)

Description not yet available.

Parameters:

Definition at line 119 of file cumdist.cpp.

Referenced by norm_to_gamma().

double bounder	(	double	x,
		double	min,
		double	max,
		double	scale
	)

Description not yet available.

Parameters:

Definition at line 17 of file linad99/bounder.cpp.

dvariable bounder	(	const prevariable &	x,
		double	min,
		double	max,
		double	scale
	)

Description not yet available.

Parameters:

Definition at line 36 of file linad99/bounder.cpp.

double boundp	(	double	x,
		double	fmin,
		double	fmax,
		const double &	_fpen
	)

Compute penalty for exceeding bounds on parameter; constant ojbects.

Inverse of double boundp(const double& x, double fmin, double fmax, const double& _fpen).

Parameters:

x	Model variable
fmin	Lower bound of x
fmin	Upper bound of x
_fpen	On return, contains penalty if x > fmax or x < fmin

Returns:: The variable x in original units

Definition at line 316 of file boundfun.cpp.

double boundp	(	double	x,
		double	fmin,
		double	fmax
	)

Return scaled variable to original units; constant objects.

Parameters:

x	Variable scaled between [-1,1]
fmin	Lower bound of x
fmin	Upper bound of x

Returns:: The variable x in original units

Definition at line 250 of file boundfun.cpp.

dvariable boundp	(	const prevariable &	x,
		double	fmin,
		double	fmax,
		const prevariable &	_fpen
	)

Compute penalty for exceeding bounds on parameter; variable ojbects.

Parameters:

x	Variable scaled between [-1,1]
fmin	Lower bound of x
fmin	Upper bound of x
_fpen	On return, contains penalty if x > 1 or x < -1

Returns:: The variable x in original units

Definition at line 108 of file boundfun.cpp.

dvariable boundp	(	const prevariable &	x,
		double	fmin,
		double	fmax,
		const prevariable &	_fpen,
		double	s
	)

Compute penalty for exceeding bounds on parameter; variable ojbects.

Parameters:

x	Variable scaled between [-1,1]
fmin	Lower bound of x
fmin	Upper bound of x
_fpen	On return, contains penalty if x > 1 or x < -1
s	Divide x by s before scaling and setting bounds

Returns:: The variable x in original units

Definition at line 95 of file boundfun.cpp.

Referenced by boundp(), nd2fboundp(), funnel_init_df1b2variable::set_value(), funnel_init_bounded_df1b2vector::set_value(), random_effects_bounded_vector_info::set_value(), re_df1b2_init_bounded_vector::set_value(), set_value(), set_value_partial(), and param_init_bounded_matrix::shared_set_value().

dvariable boundp	(	double	,
		double	,
		double	,
		double *
	)

double boundpin	(	double	x,
		double	fmin,
		double	fmax
	)

Scale model variable over [-1,1]; constant objects.

Inverse of double boundp(double x, double fmin, double fmax)

Parameters:

x	Model variable
fmin	Lower bound of x
fmin	Upper bound of x

Returns:: Scaled model variable over [-1,1].

Definition at line 397 of file boundfun.cpp.

double boundpin	(	const prevariable &	xx,
		double	fmin,
		double	fmax
	)

Scale model variable over [-1,1]; variable objects.

Inverse of dvariable boundp(const prevariable& x, double fmin, double fmax,const prevariable& _fpen).

Parameters:

x	Model variable
fmin	Lower bound of x
fmin	Upper bound of x

Returns:: Scaled model variable over [-1,1].

Definition at line 457 of file boundfun.cpp.

double boundpin	(	const prevariable &	x,
		double	fmin,
		double	fmax,
		double	s
	)

Scale model variable over [-1,1]; variable objects.

Inverse of dvariable boundp(const prevariable& x, double fmin, double fmax,const prevariable& _fpen, double s).

Parameters:

x	Model variable
fmin	Lower bound of x
fmin	Upper bound of x
s	Divide x by s before scaling and setting bounds

Returns:: Scaled model variable over [-1,1].

Definition at line 444 of file boundfun.cpp.

void check_choleski_decomp	(	const banded_symmetric_dvar_matrix &	MM,
		int &	ierr
	)

void check_derivative_values ( const char * _s )

Description not yet available.

Parameters:

Definition at line 320 of file newdar.cpp.

void check_derivative_values	(	const char *	_s,
		int	i
	)

Description not yet available.

Parameters:

Definition at line 333 of file newdar.cpp.

void check_derivative_values_break	(	const char *	_s,
		int	i,
		int	b
	)

Description not yet available.

Parameters:

Definition at line 361 of file newdar.cpp.

dmatrix choleski_decomp ( const dmatrix & MM )

Description not yet available.

Parameters:

Definition at line 33 of file dmat15.cpp.

dvar_matrix choleski_decomp ( const dvar_matrix & MM )

Description not yet available.

Parameters:

Definition at line 34 of file fvar_m39.cpp.

banded_lower_triangular_dmatrix choleski_decomp	(	const banded_symmetric_dmatrix &	S,
		int &	ierr
	)

Definition at line 293 of file dmat28.cpp.

banded_lower_triangular_dvar_matrix choleski_decomp	(	const banded_symmetric_dvar_matrix &	S,
		int &	ierr
	)

Definition at line 267 of file fvar_m40.cpp.

dmatrix choleski_decomp_error	(	const dmatrix &	MM,
		int &	ierror
	)

Description not yet available.

Parameters:

Definition at line 111 of file dmat15.cpp.

Referenced by choleski_solve_error().

dmatrix choleski_decomp_neghess_error	(	const dmatrix &	MM,
		int &	ierror
	)

Description not yet available.

Parameters:

Definition at line 176 of file dmat15.cpp.

Referenced by choleski_solve_neghess_error().

dmatrix choleski_decomp_positive	(	const dmatrix &	MM,
		const int &	_ierr
	)

Description not yet available.

Parameters:

Definition at line 98 of file dmat35.cpp.

dmatrix choleski_decomp_positive	(	const dmatrix &	MM,
		double	bound
	)

Description not yet available.

Parameters:

Definition at line 33 of file dmat35.cpp.

banded_lower_triangular_dvar_matrix choleski_decomp_positive	(	const banded_symmetric_dvar_matrix &	MM,
		double	eps,
		dvariable &	_fpen
	)

Description not yet available.

Parameters:

Definition at line 20 of file fvar_m50.cpp.

banded_lower_triangular_dmatrix choleski_decomp_trust_bound	(	const banded_symmetric_dmatrix &	_M,
		const int &	_ierr
	)

Description not yet available.

Parameters:

Definition at line 48 of file dmat43.cpp.

dvector choleski_solve_error	(	dmatrix	M,
		dvector &	v,
		int &	ierror
	)

Description not yet available.

Parameters:

Definition at line 198 of file dmat37.cpp.

Referenced by laplace_approximation_calculator::default_calculations().

dvector choleski_solve_neghess_error	(	dmatrix	M,
		dvector &	v,
		int &	ierror
	)

Description not yet available.

Parameters:

Definition at line 216 of file dmat37.cpp.

Referenced by laplace_approximation_calculator::default_calculations().

void clean	(	ivector &	v,
		int	level
	)

Description not yet available.

Parameters:

Definition at line 379 of file ivector.cpp.

dvar_vector colsum ( const dvar_matrix & v )

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a31.cpp.

dvector colsum ( const dmatrix & v )

Description not yet available.

Parameters:

Definition at line 31 of file dvect12.cpp.

ivector colsum ( const imatrix & v )

Description not yet available.

Parameters:

Definition at line 17 of file imat8.cpp.

int colsum	(	const imatrix &	m,
		int	col
	)

Description not yet available.

Parameters:

Definition at line 34 of file imat7.cpp.

double colsum	(	const dmatrix &	m,
		int	col
	)

Description not yet available.

Parameters:

Definition at line 17 of file dmat27.cpp.

Referenced by laplace_approximation_calculator::do_newton_raphson_state_space(), and get_ft().

dvariable colsum	(	const dvar_matrix &	m,
		int	col
	)

Description not yet available.

Parameters:

Definition at line 18 of file fvar_m35.cpp.

ivector column	(	const imatrix &	m,
		int	col
	)

Return copy of jth column vector from matrix m.

/param m matrix /param j column index to return

Definition at line 58 of file imat7.cpp.

dvector column	(	const dmatrix &	m,
		int	j
	)

Return copy of jth column vector from matrix m.

/param m matrix /param j column index to return

Definition at line 20 of file dmat6.cpp.

Referenced by param_init_bounded_number_vector::allocate(), derch(), operator*(), df1b2quadratic_prior::operator=(), and sort().

dvar_vector column	(	const dvar_matrix &	m,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 18 of file fvar_ar7.cpp.

pre_column_print column_print ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 33 of file dvect23.cpp.

dvector column_value	(	const dvar_matrix &	m,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 57 of file fvar_ar7.cpp.

Referenced by operator*().

dmatrix column_vector ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 17 of file dvect13.cpp.

dvar_matrix column_vector ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 49 of file dvect13.cpp.

dvector cos ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 40 of file dvect6.cpp.

dvar_vector cos ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 161 of file fvar_a29.cpp.

dmatrix cos ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 132 of file dmat20.cpp.

dvar_matrix cos ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 177 of file fvar_m27.cpp.

d3_array cos ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 62 of file d3arr2a.cpp.

Referenced by cos(), DF_dvsin(), DF_dvtan(), dfboundp(), ncos(), ndfboundp(), randn(), sin(), and tan().

dvar3_array cos ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 102 of file f3arr2.cpp.

dvector cosh ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 82 of file dvect6.cpp.

Referenced by cosh(), and sinh().

dvar_vector cosh ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 65 of file fvar_ar8.cpp.

int count_factor	(	const dvector &	v,
		const double &	eps
	)

Definition at line 14 of file factors.cpp.

Referenced by as_factor().

int count_factor ( const ivector & v )

Definition at line 65 of file factors.cpp.

dvector csolve	(	const dmatrix &	aa,
		const dvector &	z
	)

Solve a linear system using LU decomposition.

Definition at line 28 of file dmat34.cpp.

dvector cube ( const dvector & m )

Description not yet available.

Parameters:

Definition at line 410 of file dmat.cpp.

dmatrix cube ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 425 of file dmat.cpp.

d3_array cube ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr5.cpp.

Referenced by AD_df3_atan(), AD_pow_222(), boundp(), cube(), exp(), gammlnguts(), inv(), inv_cumd_beta_stable(), inv_cumd_gamma(), inv_cumd_normal_logistic_mixture(), inv_cumd_normal_mixture(), log(), posfun2(), set_derivatives(), and sqrt().

dvar_vector cube ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 71 of file fvar_a44.cpp.

dvar_matrix cube ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file f3arr7.cpp.

dvar3_array cube ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 32 of file f3arr7.cpp.

dvariable cumbvn	(	const dvariable &	x,
		const dvariable &	y,
		const dvariable &	rho
	)

Cumulative bivariate normal distribution.

Assumes two distributions X and Y both N(0,1).

Parameters:

x	Upper limit of inetegration on X.
y	Upper limit of inetegration on Y
rho	correlation coefficient.

Returns:: Probability that X is larger than x; and Y is larger than y

Definition at line 262 of file vbivnorm.cpp.

dvariable cumbvn	(	const dvariable &	xl,
		const dvariable &	yl,
		const dvariable &	xu,
		const dvariable &	yu,
		const dvariable &	rho
	)

Cumulative bivariate normal distribution.

Assumes two distributions X and Y both N(0,1).

Parameters:

xl	Lower limit of inetegration on X.
yl	Lower limit of inetegration on Y.
xu	Upper limit of inetegration on X.
yu	Upper limit of inetegration on Y.
rho	correlation coefficient.

Returns:: Probability that X is between xl and xu and Y is between yl and yu

Definition at line 282 of file vbivnorm.cpp.

dvariable cumd_bivariate_normal	(	const prevariable &	xu,
		const prevariable &	yu,
		const prevariable &	rho,
		int	nbox
	)

double cumd_cauchy ( const double & x )

Description not yet available.

Parameters:

Definition at line 17 of file cumd_cau.cpp.

dvariable cumd_cauchy ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 17 of file vcumdcau.cpp.

dvariable cumd_exponential ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 29 of file vcumdexp.cpp.

double cumd_exponential ( double x )

Description not yet available.

Parameters:

Definition at line 29 of file ccumdexp.cpp.

dvariable cumd_gamma	(	const dvariable &	x,
		const dvariable &	a
	)

Definition at line 100 of file dfgammp.cpp.

double cumd_gamma	(	double	x,
		double	a
	)

Definition at line 39 of file cgamdev.cpp.

Referenced by inv_cumd_gamma().

double cumd_logistic ( const double & x )

Description not yet available.

Parameters:

Definition at line 19 of file ccumdlog.cpp.

Referenced by cumd_norm_logistic(), and ghk_choleski_m_logistic().

dvariable cumd_logistic ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 17 of file vcumdlog.cpp.

double cumd_norm	(	const double &	x,
		double
	)

prevariable& cumd_norm_logistic	(	const prevariable &	_x,
		double	p
	)

Description not yet available.

Parameters:

Definition at line 376 of file vcumdist.cpp.

double cumd_norm_logistic	(	double	_x,
		double	p
	)

Description not yet available.

Parameters:

Definition at line 84 of file ccumdlog.cpp.

Referenced by inv_cumd_norm_logistic().

dvariable cumd_normal_cauchy_mixture	(	const prevariable &	_x,
		double	_a
	)

dvar_vector cumd_normal_cauchy_mixture	(	const dvar_vector &	_x,
		double	_a
	)

dvariable cumd_normal_mixture	(	const prevariable &	_x,
		double	_a
	)

dvar_vector cumd_normal_mixture	(	const dvar_vector &	_x,
		double	_a
	)

dvector cumd_pareto	(	const dvector &	_y,
		double	alpha,
		double	xm
	)

dvar_vector cumd_pareto	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvariable cumd_pareto	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

double cumd_pareto	(	double	_y,
		double	alpha,
		double	xm
	)

dvector cumd_upper_trunc_pareto	(	const dvector &	_y,
		double	alpha,
		double	xm
	)

dvar_vector cumd_upper_trunc_pareto	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xmin,
		const prevariable &	xmax
	)

dvariable cumd_upper_trunc_pareto	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xmin,
		const prevariable &	xmax
	)

void default_evaluation ( void )

Description not yet available.

Parameters:

Definition at line 66 of file def_eval.cpp.

Referenced by acos(), asin(), atan(), bounded_cumd_norm(), cos(), cosh(), cumd_norm(), exp(), fabs(), gammlnguts(), inv_cumd_gamma(), inv_cumd_norm_inner(), inv_cumd_normal_logistic_mixture(), inv_cumd_normal_mixture(), ldexp(), log(), log10(), prevariable::operator*=(), operator/(), prevariable::operator/=(), pow(), sfabs(), sigmoid(), sin(), sinh(), sqr(), sqrt(), tan(), and tanh().

void default_evaluation0 ( void )

Description not yet available.

Parameters:

Definition at line 131 of file def_eval.cpp.

Referenced by dvariable::dvariable().

void default_evaluation1 ( void )

Description not yet available.

Parameters:

Definition at line 98 of file def_eval.cpp.

Referenced by dvariable::dvariable(), operator+(), operator-(), prevariable::operator=(), and dvariable::operator=().

void default_evaluation1m ( void )

Description not yet available.

Parameters:

Definition at line 115 of file def_eval.cpp.

Referenced by operator-().

void default_evaluation2 ( void )

Description not yet available.

Parameters:

Definition at line 141 of file def_eval.cpp.

Referenced by cube(), fourth(), operator*(), and square().

void default_evaluation3 ( void )

Description not yet available.

Parameters:

Definition at line 162 of file def_eval.cpp.

Referenced by operator*(), and operator/().

void default_evaluation3ind ( void )

Description not yet available.

Parameters:

Definition at line 179 of file def_eval.cpp.

Referenced by betacf(), inv_cumd_beta_stable(), and dvariable::operator=().

void default_evaluation4 ( void )

Description not yet available.

Parameters:

Definition at line 260 of file def_eval.cpp.

Referenced by operator+().

void default_evaluation4ind ( void )

Description not yet available.

Parameters:

Definition at line 212 of file def_eval.cpp.

void default_evaluation4m ( void )

Description not yet available.

Parameters:

Definition at line 274 of file def_eval.cpp.

Referenced by operator-().

double density_cauchy ( const double & x )

Description not yet available.

Parameters:

Definition at line 29 of file cumd_cau.cpp.

void derch	(	const double &	_f,
		const independent_variables &	_x,
		const dvector &	_gg,
		int	n,
		const int &	_ireturn
	)

Description not yet available.

Parameters:

Definition at line 38 of file derch.cpp.

Referenced by fmm::fmin(), and fmmt1::fmin().

void derch	(	const double &	f,
		const dvector &	x,
		const dvector &	gg,
		int	n,
		const int &	ireturn
	)

void df_check_derivative_values ( void )

Description not yet available.

Parameters:

Definition at line 376 of file newdar.cpp.

Referenced by check_derivative_values().

void df_check_derivative_values_indexed ( void )

Description not yet available.

Parameters:

Definition at line 440 of file newdar.cpp.

Referenced by check_derivative_values().

void df_check_derivative_values_indexed_break ( void )

Description not yet available.

Parameters:

Definition at line 489 of file newdar.cpp.

Referenced by check_derivative_values_break().

dvariable dfatan1	(	dvariable	x,
		double	fmin,
		double	fmax,
		const prevariable &	_fpen
	)

Scale input variable between upper and lower bounds and compute a penalty for exceeding the bounds.

Parameters:

x	Variable to be scaled
fmin	Lower bound of x
fmin	Upper bound of x
_fpen	On return, contains penalty if x > fmax or x < fmin

Returns:: Scaled value of x between fmin and fmax in the range [-1,1]

Definition at line 40 of file boundfun.cpp.

dvariable dfatan1	(	dvariable	,
		double	,
		double	,
		double *
	)

dvariable dfboundp	(	double	,
		double	,
		double	,
		double *
	)

dvariable dfboundp	(	const prevariable &	x,
		double	fmin,
		double	fmax
	)

Computes the derivative of dvariable boundp(const prevariable& x, double fmin, double fmax,const prevariable& _fpen)

Parameters:

x	Variable to be scaled
fmin	Lower bound of x
fmin	Upper bound of x

Returns:: Derivative of scaled variable

Definition at line 176 of file boundfun.cpp.

Referenced by param_init_bounded_vector::sd_vscale(), param_init_bounded_number::sd_vscale(), and param_init_bounded_matrix::sd_vscale().

void dfinvpret ( void )

Adjoint code for dvar_matrix inv(const dvar_matrix& aa).

Definition at line 212 of file fvar_m15.cpp.

Referenced by inv().

double dflogistic	(	double	a,
		double	b,
		const double &	x
	)

dvariable dflogistic	(	double	a,
		double	b,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 53 of file logit.cpp.

double dfposfun	(	const double &	x,
		const double	eps
	)

Adjoint code for posfun; possibly not used.

Retained in source code to support legacy models with user-written adjoint code.

Definition at line 19 of file posfunc.cpp.

Referenced by dfcholeski_decomp_banded_positive(), and dfcholeski_decomp_positive().

dvariable dfposfun	(	const prevariable &	x,
		const double	eps
	)

Adjoint code for posfun; possibly not used.

Retained in source code to support legacy models with user-written adjoint code.

Definition at line 110 of file posfunv.cpp.

double dfposfun1	(	const double &	x,
		const double	eps
	)

Adjoint code for posfun; possibly not used.

Retained in source code to support legacy models with user-written adjoint code.

Definition at line 39 of file posfunc.cpp.

Referenced by dfcholeski_decomp_banded_positive(), and dfcholeski_decomp_positive().

double dftinv	(	double	x,
		double	fmin,
		double	fmax
	)

Inverse of dvariable dfatan1(dvariable x, double fmin, double fmax, const prevariable& _fpen)

Parameters:

x	Variable to be scaled
fmin	Lower bound of x
fmin	Upper bound of x

Definition at line 69 of file boundfun.cpp.

dvector diagonal ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file dmat31.cpp.

Referenced by function_minimizer::hess_routine_noparallel_random_effects().

ivector diagonal ( const imatrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file imat10.cpp.

dvar_vector diagonal ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file fvar_m46.cpp.

dmatrix diagonal_matrix ( const dvector & v )

dvar_matrix diagonal_matrix ( const dvar_vector & v )

double dmax	(	double	x,
		double	y
	)

Returns the maximum of two numbers.

Parameters:

x	First number
y	Second number

Definition at line 519 of file boundfun.cpp.

void dmdm_prod ( void )

Description not yet available.

Parameters:

Definition at line 124 of file fvar_m14.cpp.

Referenced by operator*().

double dmin	(	double	x,
		double	y
	)

Returns the minimum of two numbers.

Parameters:

x	First number
y	Second number

Definition at line 503 of file boundfun.cpp.

double dot	(	const dmatrix &	M,
		const dmatrix &	N
	)

Description not yet available.

Parameters:

Definition at line 88 of file orthply2.cpp.

Referenced by orthpoly2().

void dv_init ( void )

Description not yet available.

Parameters:

Definition at line 39 of file fvar_a24.cpp.

Referenced by dvar_vector::initialize(), and dvar_vector::operator=().

void dvdv_dot ( void )

Definition at line 91 of file fvar_a14.cpp.

Referenced by operator*().

dvector eigenvalues ( const dmatrix & m )

Eigenvalues.

Parameters:

m	Input matrix (unchanged on return).

Returns:: Vector of eigenvalues.

Definition at line 20 of file eigen.cpp.

dvar_vector eigenvalues ( const dvar_matrix & m1 )

Definition at line 15 of file dveigen.cpp.

dvector eigenvalues ( const banded_symmetric_dmatrix & _SS )

Description not yet available.

Parameters:

Definition at line 411 of file dmat28.cpp.

Referenced by calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), laplace_approximation_calculator::do_newton_raphson_banded(), eigenvalues(), function_minimizer::hess_inv(), function_minimizer::mcmc_routine(), function_minimizer::random_effects_maximization(), read_hessian_matrix_and_scale(), function_minimizer::sd_routine(), function_minimizer::trust_region_update(), and write_empirical_covariance_matrix().

dmatrix eigenvectors ( const dmatrix & m )

Eigenvectors.

Computes eigenvectors of a real square matrix. Input matrix is symmetrized.

Parameters:

m	Real square matrix.

Returns:: Matrix of eigenvectors.

Definition at line 40 of file eigenv.cpp.

dmatrix eigenvectors	(	const dmatrix &	m,
		const dvector &	_diag
	)

Eigenvectors.

Computes eigenvectors of a real square matrix. Input matrix is symmetrized.

Parameters:

m	Real square matrix.
_diag

Returns:: Matrix of eigenvectors.

Definition at line 76 of file eigenv.cpp.

dvar_matrix eigenvectors ( const dvar_matrix & m )

Eigenvectors.

Computes eigenvectors of a real square matrix. Input matrix is symmetrized.

Parameters:

m	Real square matrix.
_diag

Returns:: Matrix of eigenvectors.

Definition at line 38 of file dveigenv.cpp.

dmatrix eigenvectors	(	const banded_symmetric_dmatrix &	_SS,
		const dvector &	_e
	)

Description not yet available.

Parameters:

Definition at line 442 of file dmat28.cpp.

Referenced by calculate_laplace_approximation(), choleski_decomp(), laplace_approximation_calculator::do_newton_raphson_banded(), eigenvectors(), function_minimizer::hess_inv(), and function_minimizer::random_effects_maximization().

dmatrix elem_div	(	const dmatrix &	m,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 286 of file dmat20.cpp.

dvar_matrix elem_div	(	const dvar_matrix &	m,
		const dvar_matrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 261 of file fvar_m27.cpp.

dvar_matrix elem_div	(	const dvar_matrix &	m,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 289 of file fvar_m27.cpp.

dvar_matrix elem_div	(	const dmatrix &	m,
		const dvar_matrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 275 of file fvar_m27.cpp.

d3_array elem_div	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 107 of file d3arr2a.cpp.

Referenced by laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::dep_hess_routine(), dmultinom(), dnorm(), dstudent_t(), elem_div(), eplogis(), generalized_Ricker1(), generalized_Ricker2(), get_ft(), Hassell(), Hill(), HollingII(), HollingIII(), HollingIV(), function_minimizer::likeprof_routine(), logistic(), logistic3(), logisticK(), Michaelis_Menten1(), Michaelis_Menten2(), function_minimizer::monte_carlo_routine(), multifan(), pearson_residuals(), initial_params::reset1(), and Shepherd().

dvar3_array elem_div	(	const dvar3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 187 of file f3arr2.cpp.

dvar3_array elem_div	(	const d3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 255 of file f3arr2.cpp.

dvar3_array elem_div	(	const dvar3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 34 of file f3arr9.cpp.

dmatrix elem_prod	(	const dmatrix &	m,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 176 of file dmat20.cpp.

dvar_matrix elem_prod	(	const dvar_matrix &	m,
		const dvar_matrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 303 of file fvar_m27.cpp.

dvar_matrix elem_prod	(	const dvar_matrix &	m,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 332 of file fvar_m27.cpp.

dvar_matrix elem_prod	(	const dmatrix &	m,
		const dvar_matrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 318 of file fvar_m27.cpp.

d3_array elem_prod	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 92 of file d3arr2a.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::block_diagonal_calculations(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), dgamma(), dmultinom(), dnorm(), dstudent_t(), elem_prod(), generalized_Ricker1(), generalized_Ricker2(), get_ft(), get_solution_vector(), Gompertz(), Hassell(), Hill(), HollingII(), HollingIII(), HollingIV(), logistic(), logistic3(), logisticK(), Michaelis_Menten1(), Michaelis_Menten2(), monomolecular(), multifan(), neff(), nonrectangular_hyperbola(), normalized_gauss_hermite(), pearson_residuals(), Ricker(), Shepherd(), theta_logistic(), and initial_params::xinit1().

dvar3_array elem_prod	(	const dvar3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 170 of file f3arr2.cpp.

dvar3_array elem_prod	(	const d3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 238 of file f3arr2.cpp.

dvar3_array elem_prod	(	const dvar3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 17 of file f3arr9.cpp.

dvar_matrix empirical_covariance ( const dvar_matrix & v1 )

Description not yet available.

Parameters:

Definition at line 125 of file fvar_ma6.cpp.

dvar_matrix empirical_covariance	(	const dvar_matrix &	_v1,
		const imatrix &	_missflags
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_ma6.cpp.

void exit_handler ( int k )

Description not yet available.

Parameters:

Definition at line 20 of file signalh.cpp.

Referenced by onintr(), and set_signal_handlers().

dvector exp ( const dvector & t1 )

Description not yet available.

Parameters:

Definition at line 32 of file dvect7.cpp.

dvar_vector exp ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 112 of file fvar_a29.cpp.

dmatrix exp ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 264 of file dmat20.cpp.

dvar_matrix exp ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 247 of file fvar_m27.cpp.

d3_array exp ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 32 of file d3arr2a.cpp.

Referenced by add_hist_values(), beta(), betai(), bounded_cumd_norm(), bounded_robust_multivariate_normal(), bounder(), boundp(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), cmvbvu_(), cmvphi_(), cumd_exp(), cumd_exponential(), cumd_logistic(), cumd_norm(), cumd_normal_logistic_mixture(), density_negbinomial(), df_cumd_normal_logistic_mixture(), df_cumd_normal_mixture(), DF_dvmfexp(), dfboundp(), dflogistic(), function_minimizer::do_gauss_hermite_integration(), function_minimizer::do_gauss_hermite_integration_multi(), eplogis(), exp(), gamma_density(), gcf(), generalized_Ricker1(), generalized_Ricker2(), laplace_approximation_calculator::generate_antithetical_rvs(), get_bounded_normal(), get_bounded_normal_virtual(), get_ft(), laplace_approximation_calculator::get_hessian_components_banded_lme(), laplace_approximation_calculator::get_hessian_from_components_lme(), get_initial_u(), Gompertz(), gser(), function_minimizer::hybrid_mcmc_routine(), inv_cumd_beta_stable(), inv_cumd_gamma(), inv_cumd_norm(), inv_cumd_norm_ln(), inv_cumd_norm_logistic(), inv_cumd_normal_logistic_mixture(), inv_cumd_normal_mixture(), log_der_logistic(), log_likelihood_mixture(), log_likelihood_mixture_02(), logistic(), logistic3(), logisticK(), make_preliminary_hist(), function_minimizer::mcmc_routine(), mfexp(), monomolecular(), mvbvu_(), mvphi_(), ndfboundp(), negbinomial_density(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), normal_tail_right(), function_minimizer::normalize_posterior_distribution(), normalized_gauss_hermite(), old_cumd_norm(), pow(), probing_bounded_multivariate_normal(), probing_bounded_multivariate_normal_mcmc(), randpoisson(), Ricker(), rmvlogistic(), robust_regression(), sgamma(), and theta_logistic().

dvar3_array exp ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 51 of file f3arr2.cpp.

d4_array exp ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 32 of file d4arr1.cpp.

dvar4_array exp ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 32 of file f4arr1.cpp.

d5_array exp ( const d5_array & x )

dvar5_array exp ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 51 of file f5arr1.cpp.

double expdev ( const random_number_generator & _rng )

Description not yet available.

Parameters:

Definition at line 311 of file drangam.cpp.

Referenced by sgamma().

dvector extract_column	(	const dmatrix &	m,
		int	j
	)

Extract copy of jth column vector from matrix m.

/param m matrix /param j column index to return

Definition at line 40 of file dmat6.cpp.

Referenced by column(), and sort().

dvar_vector extract_column	(	const dvar_matrix &	m,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 36 of file fvar_ar7.cpp.

dvector extract_row	(	const dmatrix &	m,
		int	i
	)

Description not yet available.

Parameters:

Definition at line 63 of file dmat6.cpp.

Referenced by row().

dvar_vector extract_row	(	const dvar_matrix &	m,
		int	i
	)

Description not yet available.

Parameters:

Definition at line 78 of file fvar_ar7.cpp.

dmatrix fabs ( const dmatrix & X )

Description not yet available.

Parameters:

Definition at line 18 of file linad99/expm.cpp.

d3_array fabs ( const d3_array & m )

dvar3_array fabs ( const dvar3_array & m )

dvariable factln ( const dvariable & n )

Log-factorial $\ln(n!)$ .

Parameters:

n a number

Returns:: log of the factorial

Definition at line 59 of file combv.cpp.

dvar_vector factln ( const dvar_vector & r )

Log-factorial of an array.

Parameters:

r an array

Returns:: log of the factorial

Definition at line 187 of file combv.cpp.

void* farptr_norm ( void * )

dmatrix fillout ( const lower_triangular_dmatrix & M )

Description not yet available.

Parameters:

Definition at line 110 of file dmat36.cpp.

dmatrix fillout_trans ( const lower_triangular_dmatrix & M )

Description not yet available.

Parameters:

Definition at line 130 of file dmat36.cpp.

void fmin	(	double	f,
		const independent_variables &	x,
		const dvector &	g,
		const int &	n,
		const dvector &	w,
		const dvector &	h,
		const fmm_control &	fmc
	)

Referenced by boundp(), boundpin(), dfatan1(), dfboundp(), dftinv(), shareinfo::get_inv_matrix_shared(), laplace_approximation_calculator::get_uhat_quasi_newton_block_diagonal(), ndfboundp(), set_value(), and set_value_mc().

void fmmdisp	(	const dvector &	x,
		const dvector &	g,
		const int &	nvar,
		int	scroll_flag,
		int	noprintx
	)

Description not yet available.

Parameters:

Definition at line 104 of file fmm_disp.cpp.

Referenced by fmm::fmin(), fmmt1::fmin(), function_minimizer::limited_memory_quasi_newton(), and function_minimizer::random_effects_maximization().

void fmmdisp	(	const double *	x,
		const double *	g,
		const int &	nvar,
		int	scroll_flag,
		int	noprintx
	)

Description not yet available.

Parameters:

Definition at line 195 of file fmm_disp.cpp.

double gamma_deviate	(	double	_x,
		double	_a
	)

dvariable gamma_deviate	(	const prevariable &	_x,
		const prevariable &	_a
	)

Definition at line 19 of file vgamdev.cpp.

dvar_vector gammln ( const dvar_vector & v )

Log-Gamma of an array.

Parameters:

v an array

Returns:: log of the factorial

Definition at line 226 of file combv.cpp.

dvariable gammln ( const prevariable & xx )

Definition at line 282 of file combv.cpp.

double gasdev ( const random_number_generator & _rng )

Description not yet available.

Parameters:

Definition at line 292 of file drangam.cpp.

Referenced by sgamma().

void gauss_hermite	(	const dvector &	_t,
		const dvector &	_wts
	)

Gauss-Hermite quadature.

Computes a Gauss-Hermite quadrature formula with simple knots.

Parameters:

_t	array of abscissa
_wts	array of corresponding wights

Definition at line 36 of file gaussher.cpp.

Referenced by normalized_gauss_hermite().

void gauss_legendre	(	double	a,
		double	b,
		const dvector &	_t,
		const dvector &	_wts
	)

Gauss-Legendre quadature.

computes knots and weights of a Gauss-Legendre quadrature formula.

Parameters:

a	Left endpoint of interval
b	Right endpoint of interval
_t	array of abscissa
_wts	array of corresponding wights

Definition at line 148 of file gaussher.cpp.

Referenced by gauss_legendre().

void gauss_legendre	(	const dvector &	_x,
		const dvector &	_w
	)

Gauss-Legendre quadature.

Parameters:

_x	array of abscissa
_w	array of corresponding wights

Definition at line 331 of file gaussher.cpp.

dvector get_eigen_values	(	const dvector &	_d,
		const dvector &	_e
	)

Eigenvalues.

Parameters:

_d	Diagonal elements of the matrix computed by Householder transformation.
_e	Off-diagonal elements.

Returns:: Vector of eigenvalues.

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 11

Definition at line 264 of file eigen.cpp.

dvar_vector get_eigen_values	(	const dvar_vector &	_ddd,
		const dvar_vector &	_eee
	)

Eigenvalues and eigenvectors.

Parameters:

_d	Diagonal elements of the matrix computed by Householder transformation.
_e	Off-diagonal elements.
_z	On return containses eigenvectors.

Returns:: Vector of eigenvalues.

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 11

Definition at line 258 of file dveigen.cpp.

dvector get_eigen_values	(	const dvector &	_d,
		const dvector &	_e,
		const dmatrix &	_z
	)

Eigenvalues and eigenvectors.

Parameters:

_d	Diagonal elements of the matrix computed by Householder transformation.
_e	Off-diagonal elements.
_z	On return containses eigenvectors.

Returns:: Vector of eigenvalues.

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 11

Definition at line 337 of file eigen.cpp.

adstring get_string_marker ( void )

Description not yet available.

Parameters:

Definition at line 168 of file cmpdif3.cpp.

Referenced by df_check_derivative_values(), df_check_derivative_values_indexed(), df_check_derivative_values_indexed_break(), and df_print_identifier_string().

double ghk	(	const dvector &	lower,
		const dvector &	upper,
		const dmatrix &	Sigma,
		const dmatrix &	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file c_ghk.cpp.

double ghk	(	const dvector &	lower,
		const dvector &	upper,
		const dmatrix &	Sigma,
		const dmatrix &	eps,
		int	_i
	)

Description not yet available.

Parameters:

Definition at line 76 of file c_ghk.cpp.

dvariable ghk	(	const dvar_vector &	lower,
		const dvar_vector &	upper,
		const dvar_matrix &	Sigma,
		const dmatrix &	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file v_ghk.cpp.

dvariable ghk	(	const dvar_vector &	lower,
		const dvar_vector &	upper,
		const dvar_matrix &	Sigma,
		const dmatrix &	eps,
		int	_i
	)

Description not yet available.

Parameters:

Definition at line 171 of file v_ghk.cpp.

double ghk_choleski	(	const dvector &	lower,
		const dvector &	upper,
		const dmatrix &	ch,
		const dmatrix &	eps
	)

dvariable ghk_choleski_m	(	const dvar_vector &	upper,
		const dvar_matrix &	ch,
		const dmatrix &	eps
	)

Description not yet available.

Parameters:

Definition at line 134 of file v_ghk.cpp.

dvariable ghk_choleski_m_cauchy	(	const dvar_vector &	upper,
		const dvar_matrix &	ch,
		const dmatrix &	eps
	)

Description not yet available.

Parameters:

Definition at line 211 of file v_ghk.cpp.

dvariable ghk_choleski_m_logistic	(	const dvar_vector &	upper,
		const dvar_matrix &	ch,
		const dmatrix &	eps
	)

Description not yet available.

Parameters:

Definition at line 246 of file v_ghk.cpp.

void grad_chk ( void )

Description not yet available.

Parameters:

Definition at line 20 of file gradchk.cpp.

void gradcalc	(	int	nvar,
		const dvector &	_g
	)

Compute the gradient from the data stored in the global gradient_structure.

Parameters:

nvar	Number of variables in the gradient.
_g	Vector from 1 to nvar. On return contains the gradient.

Definition at line 86 of file sgradclc.cpp.

double gradcalc	(	int	nvar,
		const dvector &	_g,
		dvariable &	f
	)

Compute the gradient from the data stored in the global gradient_structure.

Parameters:

nvar	Number of variables in the gradient.
_g	Vector from 1 to nvar. On return contains the gradient.
f	objective function

Returns:: likelihood value

Definition at line 231 of file sgradclc.cpp.

void gradfree ( dlink * v )

Description not yet available.

Parameters:

Definition at line 57 of file fvar2.cpp.

Referenced by dvariable::~dvariable().

ivector histogram	(	double	min,
		double	max,
		int	nbin,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 17 of file histgram.cpp.

dmatrix identity_matrix	(	int	min,
		int	max
	)

Create a Identity matrix.

Parameters:

Definition at line 17 of file dmat17.cpp.

void insert_identifier_string ( const char * _s )

Description not yet available.

Parameters:

Definition at line 349 of file newdar.cpp.

dvariable inv ( const prevariable & x ) [inline]

Definition at line 8654 of file fvar.hpp.

dmatrix inv	(	const dmatrix &	m1,
		const double &	_ln_det,
		const int &	_sgn
	)

Inverse of a constant matrix by LU decomposition.

Parameters:

m1	A dmatrix, , for which the inverse is to be computed.
_ln_det	On return contains $\|\log M\|$
_sign

Returns:: A dmatrix containing $M^{-1}$ .

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 89 of file dmat3.cpp.

double inv_cumd_beta_stable	(	double	a,
		double	b,
		double	y,
		double	eps = `1.e-7`
	)

Definition at line 23 of file ccumdbetainv.cpp.

dvariable inv_cumd_beta_stable	(	const prevariable &	_a,
		const prevariable &	_b,
		const prevariable &	_y,
		double	eps = `1.e-7`
	)

Definition at line 20 of file vcumdbetainv.cpp.

double inv_cumd_cauchy ( const double & x )

Description not yet available.

Parameters:

Definition at line 49 of file cumd_cau.cpp.

dvariable inv_cumd_cauchy ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 40 of file vcumdcau.cpp.

dvariable inv_cumd_exponential ( const prevariable & y )

Description not yet available.

Parameters:

Definition at line 17 of file vcumdexp.cpp.

double inv_cumd_exponential ( double y )

Description not yet available.

Parameters:

Definition at line 17 of file ccumdexp.cpp.

dvariable inv_cumd_gamma	(	const prevariable &	_y,
		const prevariable &	_a
	)

Definition at line 124 of file vgamdev.cpp.

double inv_cumd_gamma	(	double	_y,
		double	_a
	)

Definition at line 125 of file cgamdev.cpp.

double inv_cumd_logistic ( const double & x )

Description not yet available.

Parameters:

Definition at line 36 of file ccumdlog.cpp.

Referenced by cumd_normal_logistic_mixture_initx(), ghk_choleski_m_logistic(), and inv_cumd_norm_logistic().

dvariable inv_cumd_logistic ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 34 of file vcumdlog.cpp.

double inv_cumd_norm ( const double & x )

Description not yet available.

Parameters:

Definition at line 78 of file cumdist.cpp.

dvariable inv_cumd_norm ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 136 of file vcumdist.cpp.

dvar_vector inv_cumd_norm ( const dvar_vector & x )

Description not yet available.

Parameters:

Definition at line 257 of file vcumdist.cpp.

dvariable inv_cumd_norm_logistic	(	const prevariable &	x,
		double	p
	)

Description not yet available.

Parameters:

Definition at line 356 of file vcumdist.cpp.

double inv_cumd_norm_logistic	(	double	x,
		double	p
	)

Description not yet available.

Parameters:

Definition at line 45 of file ccumdlog.cpp.

dvariable inv_cumd_normal_logistic_mixture	(	const prevariable &	_x,
		double	_a
	)

Definition at line 87 of file cnorlogmix.cpp.

Referenced by robust_normal_logistic_mixture_deviate().

double inv_cumd_normal_logistic_mixture	(	double	yy,
		double	a
	)

Description not yet available.

Parameters:

Definition at line 142 of file cnorlogmix.cpp.

dvariable inv_cumd_normal_mixture	(	const prevariable &	_yy,
		double	a
	)

Description not yet available.

Parameters:

Definition at line 94 of file normmix.cpp.

double inv_cumd_normal_mixture	(	double	yy,
		double	a
	)

Description not yet available.

Parameters:

Definition at line 90 of file cnormmix.cpp.

Referenced by robust_normal_mixture_deviate().

dvector inv_cumd_pareto	(	const dvector &	_y,
		double	alpha,
		double	xm
	)

dvar_vector inv_cumd_pareto	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvariable inv_cumd_pareto	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

double inv_cumd_pareto	(	double	_y,
		double	alpha,
		double	xm
	)

double inv_cumd_t	(	double	n,
		double	u,
		double	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file cinvcumdt.cpp.

Referenced by t_deviate().

dvariable inv_cumd_t	(	const prevariable &	n,
		const prevariable &	u,
		double	eps
	)

Description not yet available.

Parameters:

Definition at line 17 of file vinvcumdt.cpp.

dvector inv_cumd_upper_trunc_pareto	(	const dvector &	_y,
		double	alpha,
		double	xmin,
		double	xmax
	)

dvar_vector inv_cumd_upper_trunc_pareto	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xmin,
		const prevariable &	xmax
	)

double inv_cumd_upper_trunc_pareto	(	double	_y,
		double	alpha,
		double	xmin,
		double	xmax
	)

void jacobcalc	(	int	nvar,
		const dmatrix &	jac
	)

Description not yet available.

Parameters:

Definition at line 73 of file jacobclc.cpp.

Referenced by function_minimizer::depvars_routine(), and jacobcalc().

void jacobcalc	(	int	nvar,
		const ofstream &	ofs
	)

Description not yet available.

Parameters:

Definition at line 60 of file jacob2.cpp.

void jacobcalc	(	int	nvar,
		const uostream &	ofs
	)

Description not yet available.

Parameters:

Definition at line 60 of file jacob3.cpp.

dvariable kludge_cumd_cauchy ( const prevariable & x )

Description not yet available.

Parameters:

Definition at line 29 of file vcumdcau.cpp.

dvariable ln_det ( const dvar_matrix & )

Definition at line 32 of file fvar_m42.cpp.

double ln_det ( const dcompressed_triplet & )

Definition at line 2953 of file hs_sparse.cpp.

double ln_det	(	const dcompressed_triplet &	,
		const hs_symbolic &
	)

Definition at line 2931 of file hs_sparse.cpp.

double ln_det	(	const dcompressed_triplet &	,
		int &	ierr
	)

dvariable ln_det	(	const dvar_compressed_triplet &	,
		int &	ierr
	)

dvariable ln_det	(	dvar_compressed_triplet &	,
		hs_symbolic &	,
		laplace_approximation_calculator *
	)

dvariable ln_det ( dvar_compressed_triplet & )

Definition at line 2865 of file hs_sparse.cpp.

dvariable ln_det	(	dvar_compressed_triplet &	,
		hs_symbolic &
	)

Definition at line 2882 of file hs_sparse.cpp.

dvariable ln_det	(	dvar_compressed_triplet &	,
		hs_symbolic &	,
		dcompressed_triplet &
	)

Definition at line 2901 of file hs_sparse.cpp.

dvariable ln_det_choleski	(	const banded_symmetric_dvar_matrix &	S,
		int &	ierr
	)

Definition at line 248 of file fvar_m40.cpp.

double ln_det_choleski	(	const banded_symmetric_dmatrix &	MM,
		int &	ierr
	)

Todo:: Need test

Definition at line 206 of file dmat38.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_laplace_approximation(), do_gauss_hermite_block_diagonal(), and do_gauss_hermite_block_diagonal_multi().

dvariable ln_det_choleski ( const dvar_matrix & MM )

Description not yet available.

Parameters:

Definition at line 37 of file fvar_m51.cpp.

dvariable ln_det_choleski_error	(	const dvar_matrix &	MM,
		int &	onerror
	)

Description not yet available.

Parameters:

Definition at line 300 of file fvar_m51.cpp.

Referenced by calculate_laplace_approximation().

dvar_vector ln_pareto_density	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvariable ln_pareto_density	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvar_vector ln_pareto_upper_trunc_density	(	const dvar_vector &	y,
		const prevariable &	alpha,
		const prevariable &	xmin,
		const prevariable &	xmax
	)

dvar_vector ln_upper_trunc_pareto_density	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvariable ln_upper_trunc_pareto_density	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xmin,
		const prevariable &	xmax
	)

dvector log ( const dvector & t1 )

Description not yet available.

Parameters:

Definition at line 17 of file dvect7.cpp.

dvar_vector log ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 209 of file fvar_a29.cpp.

dmatrix log ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 198 of file dmat20.cpp.

dvar_matrix log ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 205 of file fvar_m27.cpp.

d3_array log ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr2a.cpp.

Referenced by AD_pow_112(), AD_pow_12(), AD_pow_122(), AD_pow_2(), AD_pow_22(), AD_pow_222(), betai(), bounded_multivariate_normal(), bounded_multivariate_normal_mcmc(), bounded_multivariate_uniform(), bounded_multivariate_uniform_mcmc(), bounded_robust_multivariate_normal(), boundp(), boundpin(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), dbeta(), dbinom(), density_negbinomial(), DF_cdvpow(), DF_dvdvpow(), df_ln_det_choleski(), dgamma(), dinvgamma(), dlnorm(), dmultinom(), dmvlogistic(), dnbinom(), dnorm(), function_minimizer::do_gauss_hermite_integration(), function_minimizer::do_gauss_hermite_integration_multi(), dpois(), dstudent_t(), dunif(), dzinbinom(), expdev(), expm(), fcomp1(), gamma_density(), gammln(), gammlnguts(), gasdev(), gcf(), laplace_approximation_calculator::generate_antithetical_rvs(), get_bounded_cauchy(), get_bounded_mixture(), get_bounded_normal(), get_bounded_normal_virtual(), laplace_approximation_calculator::get_gradient_for_hessian_calcs(), function_minimizer::get_hybrid_monte_carlo_value(), get_initial_u(), get_ln_det(), gser(), function_minimizer::hybrid_mcmc_routine(), inv(), inv_cumd_beta_stable(), inv_cumd_exp(), inv_cumd_exponential(), inv_cumd_gamma(), inv_cumd_logistic(), inv_cumd_mixture(), inv_cumd_mixture_02(), inv_cumd_norm_inner(), inv_cumd_norm_ln(), inv_cumd_norm_logistic(), invLogitProp(), function_minimizer::likeprof_routine(), ln_det(), ln_det_choleski(), ln_det_choleski_error(), ln_normal_tail_right(), log(), log_density_cauchy(), log_density_negbinomial(), log_density_poisson(), log_der_logistic(), log_gamma_density(), log_likelihood_mixture(), log_likelihood_mixture_02(), log_negbinomial_density(), lower_triangular_ln_det(), function_minimizer::mcmc_routine(), multifan(), multivariate_mixture(), negbinomial_density(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), nllBeta(), nllBinomial(), nllDirichlet(), nllGamma(), nllInverseGamma(), nllLognormal(), nllLognormal2(), nllMultiNomial(), nllNegativeBinomial(), nllNormal(), nllNormal2(), nllPoisson(), normalize_p(), pow(), probing_bounded_multivariate_normal(), probing_bounded_multivariate_normal_mcmc(), randn(), randpoisson(), regression(), rgamma(), rmvlogistic(), robust_regression(), function_minimizer::sd_routine(), funnel_init_df1b2variable::set_value(), random_effects_bounded_vector_info::set_value(), re_df1b2_init_bounded_vector::set_value(), set_value(), sgamma(), and solve().

dvar3_array log ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 68 of file f3arr2.cpp.

d4_array log ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 62 of file d4arr1.cpp.

dvar4_array log ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 62 of file f4arr1.cpp.

d5_array log ( const d5_array & x )

dvar5_array log ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 85 of file f5arr1.cpp.

dvector log10 ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 210 of file dvect6.cpp.

Referenced by log10(), and str().

dvar_vector log10 ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 164 of file fvar_ar8.cpp.

dvar_vector log_comb	(	const dvar_vector &	n,
		const dvector &	r
	)

Log-binomial of two arrays.

Parameters:

n	an array
r	an array

Returns:: log of the binomial coefficent

Definition at line 122 of file combv.cpp.

dvariable log_comb	(	double	n,
		const dvariable &	k
	)

Log of the binomial coefficent i.e log of 'n choose k'.

Parameters:

n	a number
k	a number

Returns:: log of the binomial coefficent

Definition at line 49 of file combv.cpp.

dvar_vector log_comb	(	const dvar_vector &	n,
		const dvar_vector &	r
	)

Log-binomial of two arrays.

Parameters:

n	an array
r	an array

Returns:: log of the binomial coefficent

Definition at line 70 of file combv.cpp.

dvar_vector log_comb	(	const dvector &	n,
		const dvar_vector &	r
	)

Log-binomial of a number with an arrays.

Parameters:

n	a number
r	an array

Returns:: log of the binomial coefficent

Definition at line 96 of file combv.cpp.

dvar_vector log_comb	(	double	n,
		const dvar_vector &	r
	)

Log-binomial of a number with an arrays.

Parameters:

n	a number
r	an array

Returns:: log of the binomial coefficent

Definition at line 207 of file combv.cpp.

dvar_vector log_comb	(	const dvariable &	n,
		const dvector &	r
	)

Log-binomial of a number with an arrays.

Parameters:

n	a number
r	an array

Returns:: log of the binomial coefficent

Definition at line 148 of file combv.cpp.

dvar_vector log_comb	(	const dvariable &	n,
		const dvar_vector &	r
	)

Log-binomial of a number with an arrays.

Parameters:

n	a number
r	an array

Returns:: log of the binomial coefficent

Definition at line 168 of file combv.cpp.

dvariable log_comb	(	const dvariable &	n,
		double	k
	)

Log of the binomial coefficent i.e log of 'n choose k'.

Parameters:

n	a number
k	a number

Returns:: log of the binomial coefficent

Definition at line 24 of file combv.cpp.

dvariable log_comb	(	const dvariable &	n,
		const dvariable &	k
	)

Log of the binomial coefficent i.e log of 'n choose k'.

Parameters:

n	a number
k	a number

Returns:: log of the binomial coefficent

Definition at line 36 of file combv.cpp.

dvector log_comb	(	double	n,
		const dvector &	r
	)

Log-binomial of a number with an arrays.

Parameters:

n	a number
r	an array

Returns:: log of the binomial coefficent

Definition at line 101 of file combc.cpp.

double log_density_cauchy ( const double & x )

Description not yet available.

Parameters:

Definition at line 39 of file cumd_cau.cpp.

dvariable log_der_logistic	(	double	a,
		double	b,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 35 of file logit.cpp.

double log_negbinomial_density	(	double	x,
		double	mu,
		double	tau
	)

Referenced by dnbinom_tau(), and nllNegativeBinomial2().

double logistic	(	double	a,
		double	b,
		const double &	x
	)

dvariable logistic	(	double	a,
		double	b,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 17 of file logit.cpp.

dvector lower_triagnular_solve_trans	(	const dmatrix &	M,
		const dvector &	y
	)

dvector lower_triagular_solve	(	const dmatrix &	m,
		const dvector &	v
	)

lower_triangular_dmatrix lower_triangular_choleski_decomp_positive	(	const dmatrix &	MM,
		const int &	_ierr
	)

Description not yet available.

Parameters:

Definition at line 171 of file dmat35.cpp.

double lower_triangular_ln_det ( const dmatrix & m )

Referenced by lower_triangular_ln_det().

double lower_triangular_ln_det	(	const dmatrix &	m,
		int &	sgn
	)

dvariable lower_triangular_ln_det ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 45 of file fvar_m53.cpp.

dvariable lower_triangular_ln_det	(	const dvar_matrix &	m,
		int &	sgn
	)

Description not yet available.

Parameters:

Definition at line 55 of file fvar_m53.cpp.

dvector lower_triangular_solve	(	const dmatrix &	m,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 170 of file dmat37.cpp.

Referenced by choleski_solve_error(), and choleski_solve_neghess_error().

dvar_vector lower_triangular_solve	(	const dvar_matrix &	m,
		const dvar_vector &	v
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_m53.cpp.

void ludcmp	(	const dmatrix &	_a,
		const ivector &	_indx,
		const double &	_d
	)

Lu decomposition of a constant matrix.

Parameters:

_a	A dmatrix; replaced by the by its resulting LU decomposition
_indx	An ivector containing the row permutations generated by partial pivoting
_d	A double containing -1 or +1 depending whether the number of row interchanges was even or odd, repectively. The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 174 of file dmat3.cpp.

Referenced by inv(), ln_det(), ludcmp(), and solve().

void ludcmp_index	(	const dmatrix &	_a,
		const ivector &	_indx,
		const double &	_d
	)

LU decomposition.

Deprecated:: This function may be completely unused?

\n\n The implementation of this algorithm was inspired by
"Numerical Recipes in C", 2nd edition,
Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 532 of file dmat3.cpp.

dmatrix make_dmatrix ( dcompressed_triplet & M )

Definition at line 202 of file hs_sparse.cpp.

Referenced by laplace_approximation_calculator::do_newton_raphson_banded().

int make_sub_directory ( const char * s )

Create a sub directory s.

Returns:: 1 if successful, 0 otherwise.

Definition at line 96 of file makesub.cpp.

Referenced by DF_FILE::DF_FILE(), and grad_stack::grad_stack().

dmatrix MAT	(	const dvector &	v,
		int	n,
		int	m
	)

The MAT operator is the inverse of the VEC operator.

It takes the elements of vector v and sequentially fills in the columns of an n by m matrix.

Parameters:

vector	v
integer	n, the number of rows in the resulting matrix
integer	m, the umber of columns in the resulting matrix

Definition at line 45 of file dmat29.cpp.

dvar_matrix MAT	(	const dvar_vector &	v,
		int	n,
		int	m
	)

The MAT operator is the inverse of the VEC operator.

It takes the elements of vector v and sequentially fills in the columns of an n by m matrix.

Parameters:

vector	v
integer	n, the number of rows in the resulting matrix
integer	m, the umber of columns in the resulting matrix

Definition at line 46 of file fvar_m43.cpp.

double max ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 162 of file dmat.cpp.

int max ( const imatrix & M )

Description not yet available.

Parameters:

Definition at line 17 of file imat9.cpp.

double max ( const dvector & t1 )

Description not yet available.

Parameters:

Definition at line 62 of file dvect7.cpp.

int max ( const ivector & t1 )

Description not yet available.

Parameters:

Definition at line 26 of file ivect10.cpp.

int Max ( const ivector & t1 )

Description not yet available.

Parameters:

Definition at line 17 of file ivect10.cpp.

unsigned long max	(	unsigned long	u,
		unsigned long	v
	)

Description not yet available.

Parameters:

Definition at line 35 of file maxmin.cpp.

double max	(	const double	u,
		const double	v
	)

Description not yet available.

Parameters:

Definition at line 17 of file maxmin.cpp.

int max	(	int	i,
		int	j,
		int	k
	)

Description not yet available.

Parameters:

Definition at line 592 of file fvar_m40.cpp.

double mean ( const dvector & v )

double mean ( const dmatrix & m )

Compute the mean of the matrix m.

Parameters:

Definition at line 17 of file dmat24.cpp.

double mean ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr3.cpp.

dvariable mean ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 58 of file fvar_a49.cpp.

dvariable mean ( const dvar_matrix & )

Return the variable mean of matrix m.

Definition at line 11 of file fvar_m29.cpp.

dvariable mean ( const dvar3_array & )

Return computed variable mean of variable 3-dimensional array m.

Definition at line 27 of file f3arr4.cpp.

dvariable mf_upper_bound	(	const prevariable &	x,
		double	M,
		prevariable &	fpen
	)

Description not yet available.

Parameters:

Definition at line 17 of file mfupper.cpp.

double mf_upper_bound	(	const double &	x,
		double	M,
		prevariable &	fpen
	)

dvector mfexp ( const dvector & v1 )

Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1.

Parameters:

v1	a data vector

Definition at line 18 of file dvect19.cpp.

dvector mfexp	(	const dvector &	v1,
		const double	d
	)

Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1.

Parameters:

v1	a data vector
d	macro for CGNU_DOUBLE

Definition at line 44 of file dvect19.cpp.

dvar_vector mfexp ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a50.cpp.

dvar_vector mfexp	(	const dvar_vector &	v1,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a51.cpp.

dmatrix mfexp ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 35 of file dmat26.cpp.

dmatrix mfexp	(	const dmatrix &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 57 of file dmat26.cpp.

dvar_matrix mfexp ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 35 of file fvar_m32.cpp.

dvar_matrix mfexp	(	const dvar_matrix &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 50 of file fvar_m32.cpp.

d3_array mfexp ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr7.cpp.

Referenced by dnorm(), get_ft(), logitProp(), mfexp(), multifan(), plogis(), rgamma(), and rlnorm().

d3_array mfexp	(	const d3_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 32 of file d3arr7.cpp.

dvar3_array mfexp ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file f3arr11.cpp.

dvar3_array mfexp	(	const dvar3_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 32 of file f3arr11.cpp.

d4_array mfexp ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 47 of file d4arr1.cpp.

dvar4_array mfexp ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 47 of file f4arr1.cpp.

d5_array mfexp ( const d5_array & x )

dvar5_array mfexp ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 68 of file f5arr1.cpp.

double min ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 147 of file dmat.cpp.

int min ( const ivector & t1 )

Description not yet available.

Parameters:

Definition at line 43 of file ivect10.cpp.

int min	(	const int	a,
		const int	b
	)

Smallest of two integers.

Parameters:

a	An integer
b	An integer

Returns:: A integer $z = \min(a,b)$

Definition at line 26 of file fvar_m15.cpp.

unsigned long min	(	unsigned long	u,
		unsigned long	v
	)

Description not yet available.

Parameters:

Definition at line 44 of file maxmin.cpp.

double min	(	const double	u,
		const double	v
	)

Description not yet available.

Parameters:

Definition at line 26 of file maxmin.cpp.

void myheapcheck ( char * msg )

Does nothing.

This function is only defined for older Borland compilers. The user could provide an implementation that might be useful in certain circumstances.

Parameters:

msg	Pointer to character array.

Definition at line 688 of file dvector.cpp.

Referenced by dvar_vector::allocate(), sdmatrix::allocate(), d3_array::allocate(), dvar3_array::allocate(), dmatrix::dmatrix(), dmatrix::fill(), dvector::operator=(), independent_variables::operator=(), dvector::~dvector(), ivector::~ivector(), and sdmatrix::~sdmatrix().

double nd2fboundp	(	double	x,
		double	fmin,
		double	fmax,
		const double &	fpen
	)

Scale input variable between upper and lower bounds and compute a penalty for exceeding the bounds.

Intended for use with df1b2 variables.

Parameters:

x	Variable to be scaled
fmin	Lower bound of x
fmin	Upper bound of x
_fpen	On return, contains penalty if x > fmax or x < fmin

Returns:: Scaled value of x between fmin and fmax in the range [-1,1]

Definition at line 288 of file boundfun.cpp.

Referenced by param_init_bounded_vector::curv_scale(), param_init_bounded_number::curv_scale(), and param_init_bounded_matrix::curv_scale().

dvar_matrix nograd_assign ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 217 of file cmpdif6.cpp.

dvariable nograd_assign ( double tmp )

Description not yet available.

Parameters:

Definition at line 54 of file cmpdif7.cpp.

dvar_vector nograd_assign ( dvector tmp )

Description not yet available.

Parameters:

Definition at line 199 of file cmpdif6.cpp.

Referenced by choleski_decomp(), choleski_decomp_positive(), det(), ln_det(), ln_det_choleski(), ln_det_choleski_error(), operator*(), solve(), and sum().

void nograd_assign_column	(	const dvar_matrix &	m,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 281 of file cmpdif6.cpp.

Referenced by inv().

void nograd_assign_row	(	const dvar_matrix &	m,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 28 of file cmpdif7.cpp.

dvar_matrix nograd_assign_trans ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 249 of file cmpdif6.cpp.

double norm ( const d3_array & m )

dvariable norm ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file f3arr2.cpp.

double norm ( const banded_symmetric_dmatrix & B )

Definition at line 222 of file dmat38.cpp.

dvariable norm ( const banded_symmetric_dvar_matrix & B )

Description not yet available.

Parameters:

Definition at line 696 of file fvar_m40.cpp.

double norm2 ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 167 of file d3arr2a.cpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), choleski_decomp_trust_bound(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), dlnorm(), dmvlogistic(), dnorm(), fcomp1(), fmmt1::fmin(), function_minimizer::hess_routine_and_constraint(), function_minimizer::hybrid_mcmc_routine(), laplace_approximation_calculator::lincg(), multifan(), neff(), nllLognormal(), nllLognormal2(), nllNormal(), nllNormal2(), norm(), norm2(), orthpoly(), orthpoly_constant_begin(), orthpoly_constant_begin_end(), regression(), and sumsq().

dvariable norm2 ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 34 of file f3arr2.cpp.

double norm2 ( const banded_symmetric_dmatrix & B )

Definition at line 227 of file dmat38.cpp.

dvariable norm2 ( const banded_symmetric_dvar_matrix & B )

Description not yet available.

Parameters:

Definition at line 705 of file fvar_m40.cpp.

int norm2 ( const ivector & t1 )

Description not yet available.

Parameters:

Definition at line 364 of file ivector.cpp.

dvariable norm_to_gamma	(	const prevariable &	v,
		const prevariable &	alpha,
		double	bound
	)

Description not yet available.

Parameters:

Definition at line 17 of file vnormgam.cpp.

double norm_to_gamma	(	double	v,
		double	alpha,
		double	bound
	)

Description not yet available.

Parameters:

Definition at line 17 of file cnormgam.cpp.

double normal_tail_right ( const double & x )

Description not yet available.

Parameters:

Definition at line 20 of file cumdist.cpp.

void normalized_gauss_hermite	(	const dvector &	_x,
		const dvector &	_w
	)

Gauss-Hermite quadature.

this is normlaized so that standard normal density integrates to 1

Parameters:

_x	array of abscissa
_w	array of corresponding wights

Definition at line 343 of file gaussher.cpp.

Referenced by gauss_hermite_stuff::gauss_hermite_stuff().

int operator!=	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 62 of file compare.cpp.

dvector operator&	(	const dvector &	t1,
		const dvector &	t2
	)

Description not yet available.

Parameters:

Definition at line 17 of file dvect15.cpp.

dvar_vector operator&	(	const dvar_vector &	t1,
		const dvar_vector &	t2
	)

Description not yet available.

Parameters:

Definition at line 42 of file dvect15.cpp.

dvar_vector operator*	(	const dvar_vector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a53.cpp.

dvar_vector operator*	(	const dvar_vector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a38.cpp.

dvar_vector operator*	(	const dvector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a55.cpp.

dvar_vector operator*	(	const prevariable &	x,
		const dvector &	t1
	)

Description not yet available.

Parameters:

Definition at line 43 of file fvar_a55.cpp.

dvector operator*	(	const dvector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 17 of file dvect4.cpp.

dmatrix operator*	(	const double	d,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 93 of file dmat16.cpp.

dmatrix operator*	(	const dmatrix &	m1,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 138 of file dmat16.cpp.

dvar_matrix operator*	(	const prevariable &	x,
		const dmatrix &	m
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_m38.cpp.

dvar_matrix operator*	(	const dvar_matrix &	m,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 416 of file fvar_m27.cpp.

dvar_matrix operator*	(	const prevariable &	x,
		const dvar_matrix &	m
	)

Description not yet available.

Parameters:

Definition at line 360 of file fvar_m27.cpp.

dvar_matrix operator*	(	const double	x,
		const dvar_matrix &	m
	)

Description not yet available.

Parameters:

Definition at line 75 of file fvar_m38.cpp.

dvar_matrix operator*	(	const dvar_matrix &	m,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 46 of file fvar_m38.cpp.

imatrix operator*	(	const imatrix &	m1,
		const imatrix &	m2
	)

Returns matrix multiplication (m1 x m2).

Parameters:

m1
m2

Definition at line 83 of file imat10.cpp.

d3_array operator*	(	const d3_array &	m1,
		const d3_array &	m2
	)

dmatrix operator*	(	const d3_array &	t,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 17 of file d3arr12.cpp.

d3_array operator*	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 242 of file d3arr2a.cpp.

d3_array operator*	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 257 of file d3arr2a.cpp.

dvar3_array operator*	(	const dvar3_array &	m1,
		const d3_array &	m2
	)

dvar3_array operator*	(	const dvar3_array &	m1,
		const dvariable &	d
	)

Description not yet available.

Parameters:

Definition at line 221 of file f3arr9.cpp.

dvar3_array operator*	(	const dvariable &	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 119 of file f3arr9.cpp.

dvar3_array operator*	(	const dvariable &	d,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 136 of file f3arr9.cpp.

dvar3_array operator*	(	double	d,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 153 of file f3arr9.cpp.

dvar_vector operator+	(	const double	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 28 of file fvar_a41.cpp.

dvar_vector operator+	(	const dvar_vector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a41.cpp.

dvar_vector operator+	(	const prevariable &	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 28 of file fvar_a37.cpp.

dvar_vector operator+	(	const dvar_vector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a37.cpp.

dvector operator+	(	const double	x,
		const dvector &	t1
	)

Description not yet available.

Parameters:

Definition at line 62 of file dvect4.cpp.

dvector operator+	(	const dvector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 77 of file dvect4.cpp.

dmatrix operator+	(	const double	d,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 63 of file dmat16.cpp.

dvar_matrix operator+	(	const dvariable &	x,
		const dmatrix &	m
	)

Description not yet available.

Parameters:

Definition at line 20 of file fvar_m57.cpp.

dmatrix operator+	(	const dmatrix &	m1,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 108 of file dmat16.cpp.

d3_array operator+	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 122 of file d3arr2a.cpp.

d3_array operator+	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 212 of file d3arr2a.cpp.

d3_array operator+	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 182 of file d3arr2a.cpp.

dvar3_array operator+	(	const dvar3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 204 of file f3arr2.cpp.

dvar3_array operator+	(	const d3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 272 of file f3arr2.cpp.

dvar3_array operator+	(	const dvar3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 51 of file f3arr9.cpp.

dvar3_array operator+	(	const dvar3_array &	m1,
		const dvariable &	d
	)

Description not yet available.

Parameters:

Definition at line 187 of file f3arr9.cpp.

dvar3_array operator+	(	const dvariable &	d1,
		const dvar3_array &	m1
	)

Description not yet available.

Parameters:

Definition at line 238 of file f3arr9.cpp.

dvar3_array operator+	(	const dvariable &	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 85 of file f3arr9.cpp.

dvar3_array operator+	(	double	d,
		const dvar3_array &	m1
	)

Description not yet available.

Parameters:

Definition at line 204 of file f3arr9.cpp.

dvar_vector operator-	(	const double	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a40.cpp.

dvar_vector operator-	(	const dvar_vector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a39.cpp.

dvar_vector operator- ( const dvar_vector & t1 )

Description not yet available.

Parameters:

Definition at line 64 of file fvar_a40.cpp.

dvar_vector operator-	(	const prevariable &	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a36.cpp.

dvar_vector operator-	(	const dvar_vector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a35.cpp.

dvar_vector operator-	(	const dvector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a54.cpp.

dvector operator-	(	const double	x,
		const dvector &	t1
	)

Description not yet available.

Parameters:

Definition at line 92 of file dvect4.cpp.

dvector operator-	(	const dvector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 107 of file dvect4.cpp.

dvector operator- ( const dvector & t1 )

dvar_matrix operator-	(	const dvariable &	x,
		const dmatrix &	m
	)

Description not yet available.

Parameters:

Definition at line 36 of file fvar_m57.cpp.

dmatrix operator-	(	const double	d,
		const dmatrix &	m2
	)

Description not yet available.

Parameters:

Definition at line 78 of file dmat16.cpp.

dmatrix operator-	(	const dmatrix &	m1,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 123 of file dmat16.cpp.

d3_array operator-	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 137 of file d3arr2a.cpp.

d3_array operator-	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 227 of file d3arr2a.cpp.

d3_array operator-	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 197 of file d3arr2a.cpp.

dvar3_array operator-	(	const dvar3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 221 of file f3arr2.cpp.

dvar3_array operator-	(	const d3_array &	m1,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 289 of file f3arr2.cpp.

dvar3_array operator-	(	const dvar3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 68 of file f3arr9.cpp.

dvar3_array operator-	(	const dvar3_array &	m1,
		const dvariable &	d
	)

Description not yet available.

Parameters:

Definition at line 170 of file f3arr9.cpp.

dvar3_array operator-	(	const dvariable &	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 102 of file f3arr9.cpp.

dvar3_array operator-	(	const dvariable &	m1,
		const dvar3_array &	m2
	)

dvar3_array operator-	(	const double	d,
		const dvar3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 12 of file f3arr4.cpp.

dmatrix operator- ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file dmat30.cpp.

dvar_matrix operator- ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file fvar_m45.cpp.

dvar_vector operator/	(	const double	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a43.cpp.

dvar_vector operator/	(	const dvar_vector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a34.cpp.

dvar_vector operator/	(	const prevariable &	x,
		const dvar_vector &	t1
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a42.cpp.

dvar_vector operator/	(	const dvar_vector &	t1,
		const prevariable &	x
	)

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a33.cpp.

dvector operator/	(	const double	x,
		const dvector &	t1
	)

Description not yet available.

Parameters:

Definition at line 32 of file dvect4.cpp.

dvector operator/	(	const dvector &	t1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 47 of file dvect4.cpp.

dmatrix operator/	(	const dmatrix &	m,
		const double	e
	)

Description not yet available.

Parameters:

Definition at line 35 of file dmat25.cpp.

dmatrix operator/	(	const double	e,
		const dmatrix &	m
	)

Description not yet available.

Parameters:

Definition at line 50 of file dmat25.cpp.

dvar_matrix operator/	(	const dvar_matrix &	m,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 50 of file fvar_m30.cpp.

dvar_matrix operator/	(	const dmatrix &	m,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 65 of file fvar_m30.cpp.

dvar_matrix operator/	(	const dvar_matrix &	m,
		const double	e
	)

Description not yet available.

Parameters:

Definition at line 35 of file fvar_m30.cpp.

dvar_matrix operator/	(	const double	e,
		const dvar_matrix &	m
	)

Description not yet available.

Parameters:

Definition at line 35 of file fvar_m31.cpp.

dvar_matrix operator/	(	const prevariable &	e,
		const dvar_matrix &	m
	)

Description not yet available.

Parameters:

Definition at line 50 of file fvar_m31.cpp.

d3_array operator/	(	const d3_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file d3arr2b.cpp.

d3_array operator/	(	double	m2,
		const d3_array &	m1
	)

dvar3_array operator/	(	const prevariable &	d,
		const dvar3_array &	m
	)

Description not yet available.

Parameters:

Definition at line 17 of file f3arr10.cpp.

dvar3_array operator/	(	const prevariable &	d,
		const d3_array &	m
	)

Description not yet available.

Parameters:

Definition at line 32 of file f3arr10.cpp.

dvar3_array operator/	(	const double	d,
		const dvar3_array &	m
	)

Description not yet available.

Parameters:

Definition at line 47 of file f3arr10.cpp.

dvar3_array operator/	(	const dvar3_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 51 of file f3arr5.cpp.

dvar3_array operator/	(	const d3_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file f3arr5.cpp.

dvar3_array operator/	(	const dvar3_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 34 of file f3arr5.cpp.

d4_array operator/	(	const d4_array &	m,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 29 of file d4arr2.cpp.

d4_array operator/	(	double	d,
		const d4_array &	m
	)

Description not yet available.

Parameters:

Definition at line 44 of file d4arr2.cpp.

dvar4_array operator/	(	const d4_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file f4arr2.cpp.

dvar4_array operator/	(	const dvar4_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 34 of file f4arr2.cpp.

dvar4_array operator/	(	const dvar4_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 51 of file f4arr2.cpp.

dvar5_array operator/	(	const d5_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file f5arr2.cpp.

dvar5_array operator/	(	const dvar5_array &	m,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 34 of file f5arr2.cpp.

dvar5_array operator/	(	const dvar5_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 51 of file f5arr2.cpp.

d5_array operator/	(	const d5_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file d5arr1.cpp.

d6_array operator/	(	const d6_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file d6arr1.cpp.

dvar6_array operator/	(	const d6_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file f6arr1.cpp.

dvar6_array operator/	(	const dvar6_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 34 of file f6arr1.cpp.

dvar6_array operator/	(	const dvar6_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 51 of file f6arr1.cpp.

d7_array operator/	(	const d7_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file d7arr1.cpp.

dvar7_array operator/	(	const d7_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 17 of file f7arr1.cpp.

dvar7_array operator/	(	const dvar7_array &	m,
		const double	d
	)

Description not yet available.

Parameters:

Definition at line 34 of file f7arr1.cpp.

dvar7_array operator/	(	const dvar7_array &	m,
		const prevariable &	d
	)

Description not yet available.

Parameters:

Definition at line 51 of file f7arr1.cpp.

int operator<	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 53 of file compare.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const dmatrix &	z
	)

Description not yet available.

Parameters:

Definition at line 35 of file dmat_io.cpp.

uostream& operator<<	(	const uostream &	ostr,
		const dmatrix &	z
	)

Description not yet available.

Parameters:

Definition at line 70 of file dmat_io3.cpp.

ostream& operator<<	(	const ostream &	_s,
		const d3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file d3_io.cpp.

uostream& operator<<	(	const uostream &	_ostr,
		const d3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 40 of file d3_io1.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const dvar3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 34 of file fvar3_io.cpp.

uostream& operator<<	(	const uostream &	_ostr,
		const dvar3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 68 of file d3_io1.cpp.

ostream& operator<<	(	const ostream &	ostr,
		const ivector &	z
	)

Insertion operator for ivector z.

Definition at line 34 of file ivect_io.cpp.

uostream& operator<<	(	const uostream &	_ostr,
		const ivector &	z
	)

Description not yet available.

Parameters:

Definition at line 71 of file ivec_io1.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const lvector &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file lvect_io.cpp.

uostream& operator<<	(	const uostream &	_ostr,
		const lvector &	z
	)

Description not yet available.

Parameters:

Definition at line 73 of file lvec_io1.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const dvector &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file dvect_io.cpp.

uostream& operator<<	(	const uostream &	ostr,
		const dvector &	z
	)

Description not yet available.

Parameters:

Definition at line 51 of file dvec_io2.cpp.

ostream& operator<<	(	const ostream &	ostr,
		const dvar_vector &	z
	)

Description not yet available.

Parameters:

Definition at line 36 of file fvara_io.cpp.

uostream& operator<<	(	const uostream &	ostr,
		const dvar_vector &	z
	)

Description not yet available.

Parameters:

Definition at line 70 of file fvarb_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const dvar_matrix &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file fvarm_io.cpp.

uostream& operator<<	(	const uostream &	ostr,
		const dvar_matrix &	z
	)

Description not yet available.

Parameters:

Definition at line 73 of file fvarm1_i.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const prevariable &	f
	)

Description not yet available.

Parameters:

Definition at line 36 of file fvar_io.cpp.

uostream& operator<<	(	const uostream &	_ostr,
		const prevariable &	f
	)

Description not yet available.

Parameters:

Definition at line 63 of file fvar_io.cpp.

ostream& operator<<	(	const ostream &	_s,
		preshowpoint	p
	)

Description not yet available.

Parameters:

Definition at line 51 of file admanip.cpp.

Referenced by operator<<().

ostream& operator<<	(	const ostream &	_s,
		prefixed	p
	)

Description not yet available.

Parameters:

Definition at line 72 of file admanip.cpp.

ostream& operator<<	(	const ostream &	_s,
		prescientific	p
	)

Description not yet available.

Parameters:

Definition at line 93 of file admanip.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const imatrix &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file imat_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const i3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 38 of file i3_io.cpp.

prevariable& operator<<	(	const prevariable &	_v1,
		const prevariable &	v2
	)

Description not yet available.

Parameters:

Definition at line 29 of file depvars.cpp.

dvar_vector& operator<<	(	const dvar_vector &	v1,
		const dvar_vector &	v2
	)

Description not yet available.

Parameters:

Definition at line 41 of file depvars.cpp.

dvar_matrix& operator<<	(	const dvar_matrix &	v1,
		const dvar_matrix &	v2
	)

Description not yet available.

Parameters:

Definition at line 66 of file depvars.cpp.

ostream & operator<<	(	const ostream &	_s,
		const ptr_vector &	_v
	)

Description not yet available.

Parameters:

Definition at line 202 of file ptr_vec.cpp.

uostream& operator<<	(	const uostream &	ofs,
		const dfsdmat &	m
	)

Description not yet available.

Parameters:

Definition at line 287 of file dfsdmat.cpp.

ostream& operator<<	(	const ostream &	s,
		const fmm_control &	fmc
	)

<< operator to write function minimizer details

Parameters:

s	string of details
fmc	function minimizer control object

Returns:: output stream of details.

Definition at line 117 of file fmm_cont.cpp.

ostream& operator<<	(	const ostream &	,
		const dvar_matrix_position &
	)

ostream& operator<<	(	const ostream &	_ostr,
		const d4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file d4_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const d5_array &	z
	)

Description not yet available.

Parameters:

Definition at line 65 of file d4_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const d6_array &	z
	)

Description not yet available.

Parameters:

Definition at line 93 of file d4_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const dvar4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 37 of file f4_io.cpp.

ostream& operator<<	(	const ostream &	ostr,
		const dvar5_array &	z
	)

Outputs dvar5_array z.

Definition at line 78 of file f4_io.cpp.

ostream& operator<<	(	const ostream &	ostr,
		const dvar6_array &	z
	)

Description not yet available.

Parameters:

Definition at line 100 of file f4_io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const i5_array &	z
	)

Description not yet available.

Parameters:

Definition at line 38 of file i5io.cpp.

ostream& operator<<	(	const ostream &	_ostr,
		const i4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 39 of file i4io.cpp.

ostream& operator<<	(	const ostream &	ofs1,
		const banded_symmetric_dmatrix &	S1
	)

Description not yet available.

Parameters:

Definition at line 21 of file dmat33.cpp.

ostream& operator<<	(	const ostream &	_ofs,
		const banded_symmetric_dvar_matrix &	S1
	)

Description not yet available.

Parameters:

Definition at line 145 of file fvar_m40.cpp.

ostream& operator<<	(	const ostream &	_ofs,
		const banded_lower_triangular_dmatrix &	S1
	)

Description not yet available.

Parameters:

Definition at line 258 of file dmat28.cpp.

ostream& operator<<	(	const ostream &	_ofs,
		const banded_lower_triangular_dvar_matrix &	S1
	)

Description not yet available.

Parameters:

Definition at line 196 of file fvar_m40.cpp.

ostream& operator<<	(	const ostream &	_ofs,
		const pre_column_print &	p
	)

Description not yet available.

Parameters:

Definition at line 17 of file dvect23.cpp.

ostream& operator<<	(	const ostream &	_ofs,
		const pre_zero_print &	p
	)

Description not yet available.

Parameters:

Definition at line 42 of file dvect23.cpp.

int operator<=	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 26 of file compare.cpp.

int operator==	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 17 of file compare.cpp.

int operator>	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 44 of file compare.cpp.

int operator>=	(	double	v0,
		const prevariable &	v1
	)

Description not yet available.

Parameters:

Definition at line 35 of file compare.cpp.

istream& operator>>	(	const istream &	_istr,
		const dmatrix &	_z
	)

Description not yet available.

Parameters:

Definition at line 78 of file dmat_io.cpp.

uistream& operator>>	(	const uistream &	istr,
		const dmatrix &	_z
	)

Description not yet available.

Parameters:

Definition at line 39 of file dmat_io3.cpp.

istream& operator>>	(	const istream &	_istr,
		const d3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 74 of file d3_io.cpp.

uistream& operator>>	(	const uistream &	_istr,
		const d3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 54 of file d3_io1.cpp.

istream& operator>>	(	const istream &	_istr,
		const dvar3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 52 of file fvar3_io.cpp.

uistream& operator>>	(	const uistream &	_istr,
		const dvar3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 82 of file d3_io1.cpp.

istream& operator>>	(	const istream &	istr,
		const ivector &	z
	)

Extraction operator for ivector _z.

Definition at line 84 of file ivect_io.cpp.

uistream& operator>>	(	const uistream &	_istr,
		const ivector &	_z
	)

Description not yet available.

Parameters:

Definition at line 43 of file ivec_io1.cpp.

istream& operator>>	(	const istream &	_istr,
		const lvector &	_z
	)

Description not yet available.

Parameters:

Definition at line 96 of file lvect_io.cpp.

uistream& operator>>	(	const uistream &	_istr,
		const lvector &	_z
	)

Description not yet available.

Parameters:

Definition at line 44 of file lvec_io1.cpp.

istream& operator>>	(	const istream &	_istr,
		const dvector &	_z
	)

Description not yet available.

Parameters:

Definition at line 83 of file dvect_io.cpp.

uistream& operator>>	(	const uistream &	istr,
		const dvector &	_z
	)

Description not yet available.

Parameters:

Definition at line 40 of file dvec_io2.cpp.

istream& operator>>	(	const istream &	istr,
		const dvar_vector &	_z
	)

Description not yet available.

Parameters:

Definition at line 82 of file fvara_io.cpp.

uistream& operator>>	(	const uistream &	istr,
		const dvar_vector &	_z
	)

Description not yet available.

Parameters:

Definition at line 39 of file fvarb_io.cpp.

istream& operator>>	(	const istream &	_istr,
		const dvar_matrix &	_z
	)

Description not yet available.

Parameters:

Definition at line 84 of file fvarm_io.cpp.

uistream& operator>>	(	const uistream &	istr,
		const dvar_matrix &	_z
	)

Description not yet available.

Parameters:

Definition at line 40 of file fvarm1_i.cpp.

istream& operator>>	(	const istream &	_istr,
		const prevariable &	_f
	)

Description not yet available.

Parameters:

Definition at line 47 of file fvar_io.cpp.

uistream& operator>>	(	const uistream &	_istr,
		const prevariable &	_f
	)

Description not yet available.

Parameters:

Definition at line 74 of file fvar_io.cpp.

istream& operator>>	(	const istream &	_istr,
		const imatrix &	z
	)

Description not yet available.

Parameters:

Definition at line 54 of file imat_io.cpp.

istream& operator>>	(	const istream &	istr,
		const i3_array &	z
	)

Description not yet available.

Parameters:

Definition at line 59 of file i3_io.cpp.

istream& operator>>	(	const istream &	s,
		const ptr_vector &	v
	)

uistream& operator>>	(	const uistream &	_ifs,
		const dfsdmat &	_m
	)

Description not yet available.

Parameters:

Definition at line 304 of file dfsdmat.cpp.

istream& operator>>	(	const istream &	_istr,
		const d4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 51 of file d4_io.cpp.

istream& operator>>	(	const istream &	_istr,
		const d5_array &	z
	)

Description not yet available.

Parameters:

Definition at line 79 of file d4_io.cpp.

istream& operator>>	(	const istream &	_istr,
		const d6_array &	z
	)

Description not yet available.

Parameters:

Definition at line 107 of file d4_io.cpp.

istream& operator>>	(	const istream &	istr,
		const dvar4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 52 of file f4_io.cpp.

istream& operator>>	(	const istream &	istr,
		const dvar5_array &	z
	)

Description not yet available.

Parameters:

Definition at line 87 of file f4_io.cpp.

istream& operator>>	(	const istream &	istr,
		const dvar6_array &	z
	)

Description not yet available.

Parameters:

Definition at line 113 of file f4_io.cpp.

istream& operator>>	(	const istream &	istr,
		const i5_array &	z
	)

Description not yet available.

Parameters:

Definition at line 59 of file i5io.cpp.

istream& operator>>	(	const istream &	istr,
		const i4_array &	z
	)

Description not yet available.

Parameters:

Definition at line 60 of file i4io.cpp.

int option_match	(	int	argc,
		char *	argv[],
		const char *	option
	)

Checks if the program has been invoked with a particular command line argument ("string").

Parameters:

argc	Number of command line arguments (as in all C programs)
argv	Array (of length argc) of command line arguments (as in all C programs)
option	Should be one of the possible command line arguments to an ADMB program.

Returns:: An index into "argv" where the match with "string" is obtained. In case of no match, the value "-1" is returned.

Definition at line 25 of file optmatch.cpp.

int option_match	(	int	argc,
		char *	argv[],
		const char *	option,
		int &	nopt
	)

Checks if the program has been invoked with a particular command line argument ("string").

If so, counts the number of arguments ("nopt") to this command line option. For example if the program has been invoked with the command line option "-ind FILE", then nopt=1.

Parameters:

argc	Number of command line arguments (as in all C programs)
argv	Array (of length argc) of command line arguments (as in all C programs)
option	Should be one of the possible command line arguments to an ADMB program.
nopt	On return holds the number arguments/options associated with "string".

Returns:: An index into "argv" where the match with "string" is obtained. In case of no match, the value "-1" is returned.

Definition at line 118 of file optmatch.cpp.

int option_match	(	char *	_s,
		const char *	option,
		int &	nopt
	)

Search for option in _s and returns number of option args in _nopt.

Returns:: If found return index (starts at 1), else return -1.

Definition at line 72 of file optmatch.cpp.

int option_match	(	char *	_s,
		const char *	option
	)

Search for option in _s.

Returns:: If found return index (starts at 1), else return -1.

Definition at line 46 of file optmatch.cpp.

dmatrix orthpoly	(	int	n,
		int	deg
	)

Description not yet available.

Parameters:

Definition at line 17 of file orthpoly.cpp.

dmatrix orthpoly	(	int	n,
		int	deg,
		int	skip
	)

Description not yet available.

Parameters:

Definition at line 46 of file orthpoly.cpp.

d4_array orthpoly2	(	int	d1,
		int	d2,
		int	n,
		int	m
	)

Description not yet available.

Parameters:

Definition at line 17 of file orthply2.cpp.

dmatrix orthpoly_constant_begin	(	int	n,
		int	deg,
		int	nconst
	)

Description not yet available.

Parameters:

Definition at line 75 of file orthpoly.cpp.

dmatrix orthpoly_constant_begin_end	(	int	n,
		int	deg,
		int	nconst_begin,
		int	end_degree,
		int	nconst_end
	)

Description not yet available.

Parameters:

Definition at line 143 of file orthpoly.cpp.

dmatrix outer_prod	(	const dvector &	v1,
		const dvector &	v2
	)

Description not yet available.

Parameters:

Definition at line 17 of file dmat23.cpp.

Referenced by function_minimizer::mcmc_routine(), and write_empirical_covariance_matrix().

dvar_matrix outer_prod	(	const dvar_vector &	v1,
		const dvar_vector &	v2
	)

Description not yet available.

Parameters:

Definition at line 211 of file fvar_ma6.cpp.

dvar_matrix outer_prod	(	const dvector &	v1,
		const dvar_vector &	v2
	)

Description not yet available.

Parameters:

Definition at line 269 of file fvar_ma6.cpp.

dvar_matrix outer_prod	(	const dvar_vector &	v1,
		const dvector &	v2
	)

Description not yet available.

Parameters:

Definition at line 290 of file fvar_ma6.cpp.

dvar_vector pareto_density	(	const dvar_vector &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvariable pareto_density	(	const prevariable &	_y,
		const prevariable &	alpha,
		const prevariable &	xm
	)

dvar_vector posfun	(	const dvar_vector &	x,
		double	eps,
		const prevariable &	_pen
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a62.cpp.

Referenced by choleski_decomp_positive(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), and posfun().

dvar_matrix positive_definite_matrix	(	const dvar_matrix &	MM,
		double	eps,
		dvariable &	_fpen
	)

Description not yet available.

Parameters:

Definition at line 36 of file fvar_m47.cpp.

dvector pow	(	const dvector &	v1,
		const double	x
	)

Description not yet available.

Parameters:

Definition at line 110 of file dvect6.cpp.

dvector pow	(	const dvector &	v1,
		int	x
	)

Description not yet available.

Parameters:

Definition at line 124 of file dvect6.cpp.

dvector pow	(	const double	x,
		const dvector &	v2
	)

Description not yet available.

Parameters:

Definition at line 154 of file dvect6.cpp.

ivector pow	(	const ivector &	v1,
		int	x
	)

Returns integer vector with all the base elements in ivector v1 base raised to the power exponent x.

Parameters:

v1	base elements
x	exponent

Definition at line 39 of file ivect6.cpp.

ivector pow	(	int	x,
		const ivector &	v1
	)

Returns integer vector with base x raised with all the elements in exponent ivector x.

Parameters:

x	base
v1	exponent

Definition at line 65 of file ivect6.cpp.

dvar_vector pow	(	const dvar_vector &	v1,
		const dvar_vector &	v2
	)

Description not yet available.

Parameters:

Definition at line 97 of file fvar_ar8.cpp.

dvar_vector pow	(	const dvar_vector &	v1,
		const dvector &	v2
	)

raise v1 to the power v2.

Parameters:

v1	vector of bases
v2	vector of exponents

Definition at line 147 of file f1b2v10.cpp.

dvar_vector pow	(	const dvector &	,
		const dvar_vector &	t1
	)

Definition at line 646 of file fvar_a29.cpp.

dvector pow	(	const dvector &	v1,
		const dvector &	v2
	)

Description not yet available.

Parameters:

Definition at line 138 of file dvect6.cpp.

dvar_vector pow	(	const dvar_vector &	v1,
		const double	e
	)

Description not yet available.

Parameters:

Definition at line 433 of file fvar_a29.cpp.

dvar_vector pow	(	const dvar_vector &	v1,
		int	e
	)

Description not yet available.

Parameters:

Definition at line 545 of file fvar_a29.cpp.

dvar_vector pow	(	const dvar_vector &	v1,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 487 of file fvar_a29.cpp.

dvar_vector pow	(	const dvector &	v1,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 595 of file fvar_a29.cpp.

dvar_vector pow	(	const prevariable &	x,
		const dvar_vector &	v2
	)

Description not yet available.

Parameters:

Definition at line 116 of file fvar_ar8.cpp.

dmatrix pow	(	const dmatrix &	m,
		const double	e
	)

Description not yet available.

Parameters:

Definition at line 88 of file dmat20.cpp.

dmatrix pow	(	const dmatrix &	m,
		int	e
	)

Description not yet available.

Parameters:

Definition at line 66 of file dmat20.cpp.

dvar_matrix pow	(	const dvar_matrix &	m,
		const double	e
	)

Description not yet available.

Parameters:

Definition at line 149 of file fvar_m27.cpp.

dvar_matrix pow	(	const dvar_matrix &	m,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 135 of file fvar_m27.cpp.

dvar_matrix pow	(	const dmatrix &	m,
		const prevariable &	e
	)

Description not yet available.

Parameters:

Definition at line 121 of file fvar_m27.cpp.

dvar_matrix pow	(	const dvar_matrix &	m,
		int	e
	)

Description not yet available.

Parameters:

Definition at line 107 of file fvar_m27.cpp.

d3_array pow	(	const d3_array &	m,
		int	e
	)

Description not yet available.

Parameters:

Definition at line 17 of file d3arr6.cpp.

Referenced by AD_pow_1(), AD_pow_11(), AD_pow_111(), AD_pow_112(), AD_pow_12(), AD_pow_122(), AD_pow_2(), AD_pow_22(), AD_pow_222(), ADpow_fun(), DF_cdvpow(), DF_dvatan(), DF_dvcpow(), DF_dvdvpow(), DF_dvpow(), DF_dvtan(), doubleEqual(), dzinbinom(), eplogis(), expm(), fmm_control::fmm_control(), gauss_hermite_stuff::gauss_hermite_stuff(), gauss_legendre(), generalized_Ricker1(), generalized_Ricker2(), multi_index::get_offset(), Hassell(), Hill(), HollingIII(), HollingIV(), inv_cumd_beta_stable(), inv_cumd_mixture(), inv_cumd_mixture_02(), ldexp(), mypow(), function_minimizer::neldmead(), nonrectangular_hyperbola(), norm(), orthpoly(), orthpoly2(), orthpoly_constant_begin(), orthpoly_constant_begin_end(), pow(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), read_hessian_matrix_and_scale(), read_hessian_matrix_and_scale1(), rgamma(), robust_regression(), Shepherd(), and theta_logistic().

dvar3_array pow	(	const dvar3_array &	m,
		int	e
	)

Description not yet available.

Parameters:

Definition at line 17 of file f3arr8.cpp.

double randnegbinomial	(	double	mu,
		double	tau,
		const random_number_generator &	rng
	)

Description not yet available.

Parameters:

Definition at line 17 of file rannegbn.cpp.

Referenced by dvector::fill_randnegbinomial(), and dvar_vector::fill_randnegbinomial().

double randpoisson	(	double	xm,
		const random_number_generator &	rng
	)

Poisson random deviates.

Parameters:

xm	Mean of Poisson distribution
rng	Instance of class random_number_generator.

Returns:: Integer-valued double drawn from the Poisson distribution with given mean.

Definition at line 37 of file dranpois.cpp.

Referenced by dvector::fill_randpoisson(), dvar_vector::fill_randpoisson(), and randnegbinomial().

dvariable regression	(	const dvector &	obs,
		const dvar_vector &	pred
	)

Description not yet available.

Parameters:

Definition at line 17 of file vregress.cpp.

double regression	(	const dvector &	obs,
		const dvector &	pred
	)

Description not yet available.

Parameters:

Definition at line 17 of file cregress.cpp.

void report_gradstack_flag ( void )

Description not yet available.

Parameters:

Definition at line 36 of file cmpdif3.cpp.

Referenced by set_gradstack_flag().

void reset_gradient_stack ( void )

Rewind buffer.

Definition at line 392 of file sgradclc.cpp.

Referenced by laplace_approximation_calculator::banded_calculations_lme(), function_minimizer::depvars_routine(), function_minimizer::limited_memory_quasi_newton_block(), and function_minimizer::quasi_newton_block().

long int reset_gs_stack ( void )

void reset_gs_stack ( long int )

void* restore_ad_pointer ( void )

Description not yet available.

Parameters:

Definition at line 226 of file cmpdif3.cpp.

Referenced by dfcholeski_sparse().

banded_lower_triangular_dmatrix restore_banded_lower_triangular_dvar_matrix_derivatives ( const dvar_matrix_position & _pos )

Description not yet available.

Parameters:

Definition at line 215 of file cmpdif11.cpp.

Referenced by dfcholeski_decomp_banded(), and dfcholeski_decomp_banded_positive().

banded_lower_triangular_dmatrix restore_banded_lower_triangular_dvar_matrix_value ( const dvar_matrix_position & mpos )

Description not yet available.

Parameters:

Definition at line 97 of file cmpdif11.cpp.

Referenced by dfbltsolve().

banded_symmetric_dmatrix restore_banded_symmetric_dvar_matrix_value ( const dvar_matrix_position & mpos )

Description not yet available.

Parameters:

Definition at line 76 of file cmpdif11.cpp.

Referenced by dfcholeski_decomp_banded(), and dfcholeski_decomp_banded_positive().

banded_symmetric_dmatrix restore_bounded_symmetric_dvar_matrix_derivatives ( const dvar_matrix_position & _pos )

Description not yet available.

Parameters:

Definition at line 231 of file cmpdif11.cpp.

d3_array_position restore_d3_array_position ( void )

Description not yet available.

Parameters:

Definition at line 77 of file cmpdif6.cpp.

d3_array restore_d3_array_value ( const d3_array_position & mpos )

Description not yet available.

Parameters:

Definition at line 88 of file cmpdif5.cpp.

dmatrix_position restore_dmatrix_position ( void )

Description not yet available.

Parameters:

Definition at line 115 of file cmpdif6.cpp.

Referenced by cmdm_prod(), cmdv_prod(), df_xdet(), df_xldet(), dfinvpret(), dmcm_prod(), dmdv_solve(), and restore_d3_array_value().

dmatrix restore_dmatrix_value ( const dmatrix_position & mpos )

Description not yet available.

Parameters:

Definition at line 68 of file cmpdif5.cpp.

Referenced by cmdm_prod(), cmdv_prod(), df_xdet(), df_xldet(), dfinvpret(), dmcm_prod(), dmdv_solve(), and restore_d3_array_value().

double restore_double_value ( void )

Description not yet available.

Parameters:

Definition at line 144 of file cmpdif8.cpp.

Referenced by DF_cdble_dv_div(), DF_cdble_dv_diveq(), DF_dv_double_prod(), DF_dvcpow(), DF_dvpow(), df_xdet(), df_xldet(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), and funnel_derivatives().

dmatrix restore_dvar_matrix_der_nozero ( const dvar_matrix_position & _pos )

Description not yet available.

Parameters:

Definition at line 153 of file cmpdif6.cpp.

dvector restore_dvar_matrix_derivative_column	(	const dvar_matrix_position &	_pos,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 180 of file cmpdif6.cpp.

Referenced by dfinvpret().

dvector restore_dvar_matrix_derivative_row	(	const dvar_matrix_position &	_pos,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 168 of file cmpdif6.cpp.

dmatrix restore_dvar_matrix_derivatives ( const dvar_matrix_position & pos )

Description not yet available.

Parameters:

Definition at line 138 of file cmpdif6.cpp.

Referenced by cmdm_prod(), dfcholeski_decomp(), dfcholeski_decomp_positive(), dfempirical_covarv(), dfempirical_covarv_partial(), dfmattrans(), dfouter_prodvv(), dmcm_prod(), and dmdm_prod().

dmatrix restore_dvar_matrix_derivatives ( void )

dvector restore_dvar_matrix_derivatives	(	const dvar_matrix_position &	pos,
		const int &	ii
	)

dvar_matrix_position restore_dvar_matrix_position ( void )

Description not yet available.

Parameters:

Definition at line 92 of file cmpdif6.cpp.

Referenced by cmdm_prod(), df_ln_det_choleski(), df_xdet(), df_xldet(), dfbltsolve(), dfcholeski_decomp(), dfcholeski_decomp_banded(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), dfempirical_covarv(), dfempirical_covarv_partial(), dfinvpret(), dfmatinit(), dfmattrans(), dfouter_prodvv(), dmcm_prod(), dmcv_prod(), dmdm_prod(), dmdv_prod(), dmdv_solve(), dvcm_prod(), and dvdm_prod().

dmatrix restore_dvar_matrix_value ( const dvar_matrix_position & mpos )

Description not yet available.

Parameters:

Definition at line 49 of file cmpdif5.cpp.

Referenced by df_ln_det_choleski(), dfcholeski_decomp(), dfcholeski_decomp_positive(), dfempirical_covarv(), dfempirical_covarv_partial(), dmdm_prod(), dmdv_prod(), dvcm_prod(), and dvdm_prod().

dvector restore_dvar_vector_der_nozero ( const dvar_vector_position & tmp )

Description not yet available.

Parameters:

Definition at line 142 of file cmpdif5.cpp.

Referenced by dv_minuseq(), dv_pluseq(), dv_xminuseq(), dv_xpluseq(), and restore_dvar_matrix_der_nozero().

dvector restore_dvar_vector_derivatives ( void )

dvector restore_dvar_vector_derivatives ( const dvar_vector_position & tmp )

Description not yet available.

Parameters:

Definition at line 108 of file cmpdif5.cpp.

Referenced by cmdv_prod(), cvdv_add(), cvdv_elem_div(), cvdv_elem_prod(), cvdv_sub(), DF_ccv_dble_prod(), DF_cdble_dv_add(), DF_cdble_dv_diff(), DF_cdble_dv_div(), DF_cdble_dv_diveq(), DF_cdvpow(), DF_dble_dv_add(), DF_dble_dv_diff(), DF_dble_dv_div(), DF_dv_cdble_diff(), DF_dv_cdble_div(), DF_dv_dble_diff(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dv_double_prod(), DF_dv_minus(), DF_dvatan(), DF_dvcos(), DF_dvcpow(), DF_dvcube(), DF_dvdvpow(), DF_dvexp(), DF_dvfourth(), DF_dvlog(), DF_dvmfexp(), DF_dvpow(), DF_dvsin(), DF_dvsqrt(), DF_dvsquare(), DF_dvtan(), DF_first_diference(), DF_unary_diff(), DF_v_xdble_diff(), DF_vdble_dv_diveq(), dfbltsolve(), dfcholeski_sparse(), dmcv_prod(), dmdv_prod(), dmdv_solve(), dv_assign(), dv_eqdoub(), dv_eqprev(), dv_subassign(), dvcm_prod(), dvcv_add(), dvcv_elem_div(), dvcv_elem_prod(), dvcv_sub(), dvdm_prod(), dvdv_add(), dvdv_elem_div(), dvdv_elem_prod(), dvdv_sub(), restore_banded_lower_triangular_dvar_matrix_derivatives(), restore_bounded_symmetric_dvar_matrix_derivatives(), restore_dvar_matrix_derivative_row(), and restore_dvar_matrix_derivatives().

dvar_vector_position restore_dvar_vector_position ( void )

Description not yet available.

Parameters:

Definition at line 56 of file cmpdif4.cpp.

Referenced by cmdv_prod(), cvdv_add(), cvdv_dot(), cvdv_elem_div(), cvdv_elem_prod(), cvdv_sub(), DF_ccv_dble_prod(), DF_cdble_dv_add(), DF_cdble_dv_diff(), DF_cdble_dv_div(), DF_cdble_dv_diveq(), DF_cdvpow(), DF_dble_dv_add(), DF_dble_dv_diff(), DF_dble_dv_div(), DF_dv_cdble_diff(), DF_dv_cdble_div(), DF_dv_dble_diff(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dv_double_prod(), DF_dv_minus(), DF_dvatan(), DF_dvcos(), DF_dvcpow(), DF_dvcube(), DF_dvdvpow(), DF_dvexp(), DF_dvfourth(), DF_dvlog(), DF_dvmfexp(), DF_dvpow(), DF_dvsin(), DF_dvsqrt(), DF_dvsquare(), DF_dvtan(), DF_first_diference(), DF_unary_diff(), DF_v_xdble_diff(), DF_vdble_dv_diveq(), dfbltsolve(), dfcholeski_sparse(), dfouter_prodvv(), dmcv_prod(), dmdv_prod(), dmdv_solve(), dv_assign(), dv_eqdoub(), dv_eqprev(), dv_init(), dv_minuseq(), dv_pluseq(), dv_subassign(), dv_xminuseq(), dv_xpluseq(), dvcm_prod(), dvcv_add(), dvcv_dot(), dvcv_elem_div(), dvcv_elem_prod(), dvcv_sub(), dvdm_prod(), dvdv_add(), dvdv_dot(), dvdv_elem_div(), dvdv_elem_prod(), dvdv_sub(), report_dvar_vector_derivatives(), restore_banded_lower_triangular_dvar_matrix_value(), restore_banded_symmetric_dvar_matrix_value(), restore_dvar_matrix_value(), restore_lower_triangular_dvar_matrix_value(), and X_dv_sum().

dvector restore_dvar_vector_value ( const dvar_vector_position & tmp )

Restores the size, address, and value information for a dvar_vector.

Back up the stream and read the number of bytes written in the write function'' corresponding to thisread function''

Parameters:

Definition at line 178 of file cmpdif4.cpp.

Referenced by cmdv_prod(), DF_ccv_dble_prod(), DF_cdble_dv_div(), DF_dble_dv_div(), DF_dv_cdble_div(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dvatan(), DF_dvcos(), DF_dvcpow(), DF_dvcube(), DF_dvdvpow(), DF_dvexp(), DF_dvfourth(), DF_dvlog(), DF_dvmfexp(), DF_dvpow(), DF_dvsin(), DF_dvsqrt(), DF_dvsquare(), DF_dvtan(), DF_vdble_dv_diveq(), dfbltsolve(), dfouter_prodvv(), dmcv_prod(), dmdv_prod(), dvcv_elem_div(), dvdm_prod(), dvdv_dot(), dvdv_elem_div(), dvdv_elem_prod(), restore_banded_lower_triangular_dvar_matrix_value(), restore_banded_symmetric_dvar_matrix_value(), restore_dvar_matrix_value(), and restore_lower_triangular_dvar_matrix_value().

dvector_position restore_dvector_position ( void )

Description not yet available.

Parameters:

Definition at line 70 of file cmpdif4.cpp.

Referenced by cvdv_dot(), cvdv_elem_div(), cvdv_elem_prod(), DF_ccv_dble_prod(), DF_cdvpow(), df_xdet(), df_xldet(), dfinvpret(), dmdv_solve(), dvcv_dot(), dvcv_elem_div(), dvcv_elem_prod(), dvdv_elem_div(), funnel_derivatives(), and restore_dmatrix_value().

dvector restore_dvector_value ( const dvector_position & tmp )

Restores the size, address, and value information for a dvector.

Back up the stream and read the number of bytes written in the write function'' corresponding to thisread function''

Parameters:

tmp	To get indexmin and indexmax

Returns:: dvector

Definition at line 139 of file cmpdif4.cpp.

Referenced by cvdv_dot(), cvdv_elem_div(), cvdv_elem_prod(), DF_cdvpow(), df_xdet(), df_xldet(), dfinvpret(), dmdv_solve(), dvcv_dot(), dvcv_elem_div(), dvcv_elem_prod(), dvdv_elem_div(), funnel_derivatives(), and restore_dmatrix_value().

int restore_int_value ( void )

Description not yet available.

Parameters:

Definition at line 155 of file cmpdif8.cpp.

Referenced by df_check_derivative_values_indexed(), df_check_derivative_values_indexed_break(), dfcholeski_sparse(), dfempirical_covarv_partial(), and funnel_derivatives().

ivector_position restore_ivector_position ( void )

Description not yet available.

Parameters:

Definition at line 41 of file cmpdif4.cpp.

Referenced by df_xdet(), df_xldet(), dfinvpret(), dmdv_solve(), dv_subassign(), and restore_imatrix_value().

ivector restore_ivector_value ( const ivector_position & tmp )

Description not yet available.

Parameters:

Definition at line 156 of file cmpdif4.cpp.

Referenced by df_xdet(), df_xldet(), dfinvpret(), dmdv_solve(), dv_subassign(), and restore_imatrix_value().

lmatrix_position restore_lmatrix_position ( void )

lmatrix restore_lmatrix_value ( const lmatrix_position & )

void* restore_pointer_value ( void )

Description not yet available.

Parameters:

Definition at line 166 of file cmpdif8.cpp.

double restore_prevariable_derivative ( const prevariable_position & _pos )

Description not yet available.

Parameters:

Definition at line 104 of file cmpdif8.cpp.

Referenced by cvdv_dot(), df_ln_det_choleski(), DF_vdble_dv_diveq(), df_xdet(), df_xldet(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), dmdv_solve(), dvcv_dot(), dvdv_dot(), funnel_derivatives(), and X_dv_sum().

double restore_prevariable_derivative ( void )

Description not yet available.

Parameters:

Definition at line 116 of file cmpdif8.cpp.

prevariable_position restore_prevariable_position ( void )

Description not yet available.

Parameters:

Definition at line 39 of file cmpdif8.cpp.

Referenced by DF_ccv_dble_prod(), DF_cdvpow(), DF_dble_dv_add(), DF_dble_dv_diff(), DF_dble_dv_div(), DF_dv_dble_diff(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dvdvpow(), DF_v_xdble_diff(), DF_vdble_dv_diveq(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), dv_eqprev(), dv_xminuseq(), dv_xpluseq(), and funnel_derivatives().

double restore_prevariable_value ( void )

Description not yet available.

Parameters:

Definition at line 131 of file cmpdif8.cpp.

Referenced by DF_cdvpow(), DF_dble_dv_div(), DF_dv_cdble_div(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dvdvpow(), and DF_vdble_dv_diveq().

hs_smatrix* return_choleski_decomp ( dcompressed_triplet & st )

Definition at line 2636 of file hs_sparse.cpp.

Referenced by calculate_importance_sample_shess().

dvar_hs_smatrix* return_choleski_decomp ( dvar_compressed_triplet & st )

Definition at line 2653 of file hs_sparse.cpp.

dvector return_choleski_decomp_solve	(	dcompressed_triplet &	dct,
		dvector &	eps
	)

Definition at line 2670 of file hs_sparse.cpp.

dvector return_choleski_factor_solve	(	hs_smatrix *	PL,
		dvector &	eps
	)

Definition at line 2693 of file hs_sparse.cpp.

Referenced by calculate_importance_sample_shess().

dvar_vector return_choleski_factor_solve	(	dvar_hs_smatrix *	PL,
		dvector &	eps
	)

Definition at line 2710 of file hs_sparse.cpp.

double robust_normal_logistic_mixture_deviate	(	double	x,
		double	spread
	)

Description not yet available.

Parameters:

Definition at line 118 of file cnorlogmix.cpp.

double robust_normal_mixture_deviate	(	double	x,
		double	spread
	)

Description not yet available.

Parameters:

Definition at line 130 of file cnorlogmix.cpp.

dvariable robust_normal_mixture_deviate	(	const prevariable &	x,
		double	spread
	)

Description not yet available.

Parameters:

Definition at line 30 of file vnorlogmix.cpp.

dvariable robust_regression	(	const dvector &	obs,
		const dvar_vector &	pred,
		const double	a
	)

Description not yet available.

Parameters:

Definition at line 51 of file newreg2.cpp.

dvariable robust_regression	(	const dvector &	obs,
		const dvar_vector &	pred,
		const dvariable &	a
	)

Description not yet available.

Parameters:

Definition at line 17 of file newreg2.cpp.

dvariable robust_regression_fixed	(	const dvector &	obs,
		const dvar_vector &	pred,
		double	a = `0.7`
	)

dvector row	(	const dmatrix &	m,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 29 of file dmat6.cpp.

Referenced by laplace_approximation_calculator::check_sparse_matrix_structure().

dvar_vector row	(	const dvar_matrix &	m,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 27 of file fvar_ar7.cpp.

dmatrix row_vector ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 33 of file dvect13.cpp.

dvar_matrix row_vector ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 65 of file dvect13.cpp.

dvar_vector rowsum ( const dvar_matrix & v )

Description not yet available.

Parameters:

Definition at line 40 of file fvar_a31.cpp.

dvector rowsum ( const dmatrix & v )

Description not yet available.

Parameters:

Definition at line 55 of file dvect12.cpp.

Referenced by expm().

ivector rowsum ( const imatrix & v )

Description not yet available.

Parameters:

Definition at line 40 of file imat8.cpp.

void save_ad_pointer ( void * p )

Description not yet available.

Parameters:

Definition at line 215 of file cmpdif3.cpp.

Referenced by varchol().

void save_dmatrix_derivatives	(	const dvar_matrix_position &	_pos,
		const double	x,
		const int &	i,
		int &	j
	)

Description not yet available.

Parameters:

Definition at line 221 of file cmpdif5.cpp.

Referenced by df_xdet(), df_xldet(), dfinvpret(), and dmdv_solve().

void save_double_derivative	(	const double	x,
		const prevariable_position &	_pos
	)

Description not yet available.

Parameters:

Definition at line 28 of file cmpdif8.cpp.

Referenced by DF_ccv_dble_prod(), DF_cdvpow(), DF_dble_dv_add(), DF_dble_dv_diff(), DF_dble_dv_div(), DF_dv_dble_diff(), DF_dv_dble_div(), DF_dv_dble_prod(), DF_dvdvpow(), DF_v_xdble_diff(), DF_vdble_dv_diveq(), dv_eqprev(), dv_xminuseq(), and dv_xpluseq().

void save_double_value ( double x )

Description not yet available.

Parameters:

Definition at line 75 of file cmpdif8.cpp.

Referenced by choleski_decomp_positive(), det(), funnel_gradcalc(), ln_det(), operator*(), operator/(), dvar_vector::operator/=(), and pow().

void save_int_value ( int x )

Description not yet available.

Parameters:

Definition at line 85 of file cmpdif8.cpp.

Referenced by check_derivative_values(), check_derivative_values_break(), empirical_covariance(), funnel_gradcalc(), and varchol().

void save_pointer_value ( void * ptr )

Description not yet available.

Parameters:

Definition at line 95 of file cmpdif8.cpp.

void send_dv3_to_master ( const dvar3_array & v )

void set_gradstack_flag	(	char *	_str,
		int	i,
		int	j
	)

Description not yet available.

Parameters:

Definition at line 107 of file cmpdif3.cpp.

void set_gradstack_flag ( char * str )

Description not yet available.

Parameters:

Definition at line 81 of file cmpdif3.cpp.

void set_value	(	const dvar_matrix &	x,
		const dvar_vector &	v,
		const int &	_ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 235 of file set.cpp.

Referenced by set_value().

void set_value	(	const dvar_matrix &	x,
		const dvar_vector &	v,
		const int &	ii,
		double	fmin,
		double	fmax,
		const dvariable &	fpen,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 272 of file set.cpp.

void set_value	(	const dvar_vector &	_x,
		const dvar_vector &	v,
		const int &	_ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 128 of file set.cpp.

void set_value	(	const dvar_vector &	_x,
		const dvar_vector &	v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		const dvariable &	fpen,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 169 of file set.cpp.

void set_value	(	const prevariable &	_x,
		const dvar_vector &	v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 19 of file set.cpp.

void set_value	(	const prevariable &	_x,
		const dvar_vector &	v,
		const int &	_ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 30 of file set.cpp.

void set_value	(	const dvar_vector &	x,
		const dvar_vector &	v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 110 of file set.cpp.

void set_value	(	const prevariable &	_x,
		const dvar_vector &	v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		const dvariable &	_fpen,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 54 of file set.cpp.

void set_value	(	const prevariable &	_u,
		const dvar_vector &	x,
		const int &	_ii,
		const double	fmin,
		const double	fmax,
		const dvariable &	_fpen
	)

Description not yet available.

Parameters:

Definition at line 79 of file set.cpp.

void set_value	(	const dvar_vector &	x,
		const dvar_vector &	v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		const dvariable &	fpen
	)

Description not yet available.

Parameters:

Definition at line 148 of file set.cpp.

void set_value	(	const dvar_matrix &	x,
		const dvar_vector &	v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 217 of file set.cpp.

void set_value	(	const dvar_matrix &	x,
		const dvar_vector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax,
		const dvariable &	fpen
	)

Description not yet available.

Parameters:

Definition at line 254 of file set.cpp.

void set_value	(	dvar3_array &	x,
		const dvar_vector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 374 of file set.cpp.

void set_value	(	dvar3_array &	x,
		const dvar_vector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax,
		const dvariable &	fpen
	)

Description not yet available.

Parameters:

Definition at line 290 of file set.cpp.

void set_value_exp	(	const prevariable &	_x,
		const dvar_vector &	v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		const dvariable &	fpen,
		double	s
	)

void set_value_inv	(	const dvar_matrix &	x,
		const dvector &	v,
		const int &	ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 412 of file setin.cpp.

Referenced by set_value_inv().

void set_value_inv	(	const dvar_matrix &	x,
		const dvector &	v,
		const int &	ii,
		double	fmin,
		double	fmax,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 450 of file setin.cpp.

void set_value_inv	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 374 of file setin.cpp.

void set_value_inv	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 337 of file setin.cpp.

void set_value_inv	(	const dvar_matrix &	x,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 394 of file setin.cpp.

void set_value_inv	(	const prevariable &	x,
		const dvector &	_v,
		const int &	_ii,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 42 of file set.cpp.

void set_value_inv	(	const prevariable &	x,
		const dvector &	_v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 295 of file setin.cpp.

void set_value_inv	(	const dvar_matrix &	x,
		const dvector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 431 of file setin.cpp.

void set_value_inv	(	const dvar3_array &	x,
		const dvector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 487 of file setin.cpp.

void set_value_inv	(	const dvar3_array &	x,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 469 of file setin.cpp.

void set_value_inv	(	const double	x,
		const dvector &	_v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 17 of file setin.cpp.

void set_value_inv	(	const prevariable &	x,
		const dvector &	_v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		double	s
	)

Description not yet available.

Parameters:

Definition at line 67 of file set.cpp.

void set_value_inv	(	const prevariable &	u,
		const dvector &	_x,
		const int &	_ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 40 of file setin.cpp.

void set_value_inv	(	const double	u,
		const dvector &	_x,
		const int &	_ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 28 of file setin.cpp.

void set_value_inv	(	const dvector &	x,
		const dvector &	_v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 52 of file setin.cpp.

void set_value_inv	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii
	)

Description not yet available.

Parameters:

Definition at line 318 of file setin.cpp.

void set_value_inv	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 101 of file setin.cpp.

void set_value_inv	(	const dvector &	x,
		const dvector &	_v,
		const int &	_ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 84 of file setin.cpp.

void set_value_inv	(	const dmatrix &	x,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 118 of file setin.cpp.

void set_value_inv	(	const dmatrix &	x,
		const dvector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 136 of file setin.cpp.

void set_value_inv	(	const d3_array &	x,
		const dvector &	v,
		const int &	ii
	)

Description not yet available.

Parameters:

Definition at line 155 of file setin.cpp.

void set_value_inv	(	const d3_array &	x,
		const dvector &	v,
		const int &	ii,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 173 of file setin.cpp.

void set_value_inv_exp	(	const prevariable &	x,
		const dvector &	_v,
		const int &	_ii,
		double	fmin,
		double	fmax,
		double	s
	)

void set_value_inv_partial	(	const dvector &	x,
		const dvector &	_v,
		const int &	_ii,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 192 of file setin.cpp.

Referenced by set_value_inv_partial().

void set_value_inv_partial	(	const dvector &	x,
		const dvector &	_v,
		const int &	_ii,
		int	n,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 214 of file setin.cpp.

void set_value_inv_partial	(	const dmatrix &	x,
		const dvector &	v,
		const int &	ii,
		int	n
	)

void set_value_inv_partial	(	const dvar_matrix &	x,
		const dvector &	_v,
		const int &	_ii,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 236 of file setin.cpp.

void set_value_inv_partial	(	const d3_array &	x,
		const dvector &	v,
		const int &	ii,
		int	n
	)

void set_value_inv_partial	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 251 of file setin.cpp.

void set_value_inv_partial	(	const dvar_vector &	x,
		const dvector &	_v,
		const int &	_ii,
		int	n,
		const double	fmin,
		const double	fmax
	)

Description not yet available.

Parameters:

Definition at line 273 of file setin.cpp.

void set_value_partial	(	const dvar_vector &	x,
		const dvar_vector &	v,
		const int &	_ii,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 323 of file set.cpp.

Referenced by set_value_partial().

void set_value_partial	(	const dvar_vector &	x,
		const dvar_vector &	v,
		const int &	_ii,
		int	n,
		const double	fmin,
		const double	fmax,
		const dvariable &	fpen
	)

Description not yet available.

Parameters:

Definition at line 348 of file set.cpp.

void set_value_partial	(	const dvar_matrix &	x,
		const dvar_vector &	v,
		const int &	_ii,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 308 of file set.cpp.

void set_value_partial	(	dvar3_array &	x,
		const dvar_vector &	v,
		const int &	ii,
		int	n
	)

ostream& setfixed ( const ostream & s )

prefixed setfixed ( void )

Description not yet available.

Parameters:

Definition at line 62 of file admanip.cpp.

Referenced by function_minimizer::sd_routine().

ostream& setscientific ( const ostream & s )

prescientific setscientific ( void )

Description not yet available.

Parameters:

Definition at line 83 of file admanip.cpp.

Referenced by calculate_laplace_approximation(), choleski_decomp(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), df_check_derivative_values(), df_check_derivative_values_indexed(), laplace_approximation_calculator::do_newton_raphson_state_space(), get_inverse_sparse_hessian(), function_minimizer::hess_routine_noparallel_random_effects(), pads(), and function_minimizer::sd_routine().

preshowpoint setshowpoint ( void )

Description not yet available.

Parameters:

Definition at line 41 of file admanip.cpp.

Referenced by laplace_approximation_calculator::do_newton_raphson_banded(), function_minimizer::hess_inv(), and initial_params::save().

double sfabs ( const double v1 )

Description not yet available.

Parameters:

Definition at line 20 of file dvect14.cpp.

Referenced by function_minimizer::hess_routine_noparallel_random_effects(), and sfabs().

dvector sfabs ( const dvector & t1 )

Description not yet available.

Parameters:

Definition at line 54 of file dvect14.cpp.

double sgamma	(	double	a,
		const random_number_generator &	_rng
	)

Description not yet available.

Parameters:

Definition at line 44 of file drangam.cpp.

Referenced by randnegbinomial(), and sgamma().

ivector sgn ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 17 of file dvect24.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::banded_calculations_lme(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_laplace_approximation(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), evaluate_function_with_quadprior(), laplace_approximation_calculator::get_gradient_for_hessian_calcs(), get_initial_u(), get_ln_det(), function_minimizer::hess_determinant(), inv(), inv_cumd_t(), ln_det(), lower_triangular_ln_det(), function_minimizer::monte_carlo_routine(), quadratic_prior::operator=(), function_minimizer::projected_hess_determinant(), function_minimizer::random_effects_maximization(), function_minimizer::sd_routine(), solve(), and function_minimizer::unrestricted_hess_determinant().

ivector sgn ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 17 of file fvar_a58.cpp.

double sigmoid ( const double v1 )

Description not yet available.

Parameters:

Definition at line 34 of file dvar.cpp.

dvector sin ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 26 of file dvect6.cpp.

dvar_vector sin ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 64 of file fvar_a29.cpp.

dmatrix sin ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 154 of file dmat20.cpp.

dvar_matrix sin ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 191 of file fvar_m27.cpp.

d3_array sin ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 47 of file d3arr2a.cpp.

Referenced by boundp(), cmvbvu_(), cos(), DF_dvcos(), gammln(), mvbvu_(), nsin(), sin(), and tan().

dvar3_array sin ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 85 of file f3arr2.cpp.

sing_val_decomp singval_decomp ( const dmatrix & _a )

Singular value decomposition.

param _a

Definition at line 71 of file dmat42.cpp.

dvector sinh ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 68 of file dvect6.cpp.

Referenced by cosh(), and sinh().

dvar_vector sinh ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 49 of file fvar_ar8.cpp.

int size_count ( const dvar_vector & x )

Description not yet available.

Parameters:

Definition at line 17 of file size.cpp.

int size_count ( const dvar_matrix & x )

Description not yet available.

Parameters:

Definition at line 41 of file size.cpp.

int size_count ( const dvar3_array & x )

Description not yet available.

Parameters:

Definition at line 83 of file size.cpp.

int size_count ( const dvar4_array & x )

Description not yet available.

Parameters:

Definition at line 104 of file size.cpp.

int size_count ( const dvector & x )

Description not yet available.

Parameters:

Definition at line 17 of file dsize.cpp.

Referenced by cubic_spline(), dlnorm(), dnorm(), dpois(), get_ft(), invLogitProp(), logitProp(), matrix2vector(), mean(), nllBeta(), nllGamma(), nllInverseGamma(), nllLognormal(), nllLognormal2(), nllNegativeBinomial(), nllNormal(), nllNormal2(), nllPoisson(), regression(), function_minimizer::sd_routine(), and size_count().

int size_count ( const dmatrix & x )

Description not yet available.

Parameters:

Definition at line 35 of file dsize.cpp.

int size_count ( const d3_array & x )

Description not yet available.

Parameters:

Definition at line 67 of file dsize.cpp.

int size_count ( const d4_array & x )

Description not yet available.

Parameters:

Definition at line 125 of file size.cpp.

int size_count_partial	(	const dvar_vector &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 29 of file size.cpp.

int size_count_partial	(	const dvar_matrix &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 62 of file size.cpp.

int size_count_partial	(	const dvar3_array &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 146 of file size.cpp.

int size_count_partial	(	const dvector &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 26 of file dsize.cpp.

Referenced by size_count_partial().

int size_count_partial	(	const dmatrix &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 51 of file dsize.cpp.

int size_count_partial	(	const d3_array &	x,
		int	n
	)

Description not yet available.

Parameters:

Definition at line 83 of file dsize.cpp.

void slave_gradcalc ( void )

int smbfct_	(	int *	neqns,
		ivector &	xadj,
		ivector &	adjncy,
		ivector &	perm,
		ivector &	invp,
		ivector &	xlnz,
		int *	maxlnz,
		ivector &	xnzsub,
		ivector &	nzsub,
		int *	maxsub,
		ivector &	rchlnk,
		ivector &	mrglnk,
		ivector &	marker,
		int *	flag__
	)

dvar_vector solve	(	const dvar_matrix &	aa,
		const dvar_vector &	z
	)

Solve a linear system using LU decomposition.

Parameters:

aa	A dvar_matrix containing LU decomposition of input matrix. .
z	A dvar_vector containing the RHS, of the linear equation $A\cdot X = B$ , to be solved.

Returns:: A dvar_vector containing solution vector .

Definition at line 33 of file fvar_m24.cpp.

dvar_vector solve	(	const dvar_matrix &	aa,
		const dvar_vector &	z,
		prevariable &	ln_unsigned_det,
		const prevariable &	_sign
	)

Solve a linear sysgem using LU decomposition.

Parameters:

aa	A dvar_matrix containing LU decomposition of input matrix. .
z	A dvar_vector containing the RHS, of the linear equation $A\cdot X = B$ , to be solved.
_ln_unsigned_deg
sign

Returns:: A dvar_vector containing solution vector .

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 52 of file fvar_m24.cpp.

dvector solve	(	const dmatrix &	aa,
		const dvector &	z
	)

Solve a linear system using LU decomposition.

Parameters:

aa	A dmatrix containing LU decomposition of input matrix. .
z	A dvector containing the RHS, of the linear equation $A\cdot X = B$ , to be solved.

Returns:: A dvector containing solution vector .

Definition at line 42 of file dmat34.cpp.

dvector solve	(	const dmatrix &	aa,
		const dvector &	z,
		const double &	_ln_unsigned_det,
		double &	sign
	)

Solve a linear system using LU decomposition.

Parameters:

aa	A dmatrix containing LU decomposition of input matrix. .
z	A dvector containing the RHS, of the linear equation $A\cdot X = B$ , to be solved.
_ln_unsigned_deg
sign

Returns:: A dvector containing solution vector .

The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 62 of file dmat34.cpp.

dvar_matrix solve	(	const dvar_matrix &	aa,
		const dvar_matrix &	zz
	)

Definition at line 35 of file linad99/expm.cpp.

dmatrix solve	(	const banded_symmetric_dmatrix &	m,
		const dmatrix &	n
	)

Description not yet available.

Parameters:

Definition at line 69 of file dmat37.cpp.

dmatrix solve	(	const dmatrix &	m,
		const dmatrix &	M
	)

/param aa /param tz

Definition at line 32 of file dmat38.cpp.

dvector solve	(	const banded_symmetric_dmatrix &	m,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 38 of file dmat37.cpp.

dvar_vector solve	(	const banded_lower_triangular_dvar_matrix &	m,
		const dvar_vector &	v
	)

Description not yet available.

Parameters:

Definition at line 18 of file fvar_m41.cpp.

dvector solve	(	const banded_lower_triangular_dmatrix &	m,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 79 of file dmat37.cpp.

dvector solve	(	const lower_triangular_dmatrix &	m,
		const dvector &	v
	)

Description not yet available.

Parameters:

Definition at line 30 of file dmat36.cpp.

dvector solve	(	const dcompressed_triplet &	,
		const dmatrix &	,
		const dvector &
	)

dvector solve	(	const dcompressed_triplet &	,
		const dvector &	,
		const hs_symbolic &	,
		int &	ierr
	)

Definition at line 2820 of file hs_sparse.cpp.

dvector solve	(	const dcompressed_triplet &	,
		const dvector &	,
		const hs_symbolic &
	)

Definition at line 2793 of file hs_sparse.cpp.

dvector solve	(	const dcompressed_triplet &	,
		const dmatrix &	,
		const dvector &	,
		const hs_symbolic &
	)

dvector solve_trans	(	const banded_lower_triangular_dmatrix &	M,
		const dvector &	y
	)

Description not yet available.

Parameters:

Definition at line 108 of file dmat37.cpp.

dvector solve_trans	(	const lower_triangular_dmatrix &	M,
		const dvector &	y
	)

Description not yet available.

Parameters:

Definition at line 80 of file dmat36.cpp.

Referenced by laplace_approximation_calculator::banded_calculations_trust_region_approach(), calculate_importance_sample(), laplace_approximation_calculator::do_newton_raphson_banded(), function_minimizer::hess_routine_noparallel_random_effects(), solve(), and safe_choleski_solver::solve().

dvar_vector solve_trans	(	const banded_lower_triangular_dvar_matrix &	M,
		const dvector &	y
	)

Description not yet available.

Parameters:

Definition at line 17 of file fvar_m52.cpp.

dvar_vector sort	(	const dvar_vector &	,
		int	NSTACK = `60`
	)

dvector sort	(	const dvector &	v,
		int	NSTACK
	)

Quicksort.

Parameters:

v	A dvector to be sorted.
NSTACK	Not used.

Returns:: dvector object containing the input vector sorted in ascending order.

Adopted from the GNU C Library. http://www.corpit.ru/mjt/qsort.html

Definition at line 40 of file dvsort.cpp.

ivector sort	(	const ivector &	v,
		int	NSTACK
	)

Quicksort.

Parameters:

v	Vector of integers to be sorted
NSTACK	Not used.

Returns:: ivector object containing the input vector sorted in ascending order.

Adopted from the GNU C Library. http://www.corpit.ru/mjt/qsort.html

Definition at line 40 of file ivsort.cpp.

dvector sort	(	const dvector &	_v,
		const ivector &	_index,
		int	NSTACK
	)

Quicksort.

Parameters:

_v	A dvector to be sorted.
_index	ivector on return containing the input order of the original vector.
NSTACK	Not used.

Returns:: ivector object containing the input vector sorted in ascending order.

Adopted from the GNU C Library. http://www.corpit.ru/mjt/qsort.html

Definition at line 77 of file dvsort.cpp.

ivector sort	(	const ivector &	_v,
		const ivector &	_index,
		int	NSTACK
	)

Quicksort.

Parameters:

_v	Vector of integers to be sorted
_index	ivector on return containing the input order of the original vector.
NSTACK	Not used.

Returns:: ivector object containing the input vector sorted in ascending order.

Adopted from the GNU C Library. http://www.corpit.ru/mjt/qsort.html

Definition at line 74 of file ivsort.cpp.

dmatrix sort	(	const dmatrix &	m,
		int	column,
		int	NSTACK
	)

imatrix sort	(	const imatrix &	m,
		int	col,
		int	NSTACK
	)

Description not yet available.

Parameters:

Definition at line 17 of file imsort.cpp.

void spdll_exit ( int )

Definition at line 54 of file gradstrc.cpp.

Referenced by do_dll_housekeeping().

dvector sqr ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 238 of file dvect6.cpp.

dvar_vector sqr ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 385 of file fvar_a29.cpp.

dmatrix sqr ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 242 of file dmat20.cpp.

dvar_matrix sqr ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 233 of file fvar_m27.cpp.

d3_array sqr ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 32 of file d3arr2c.cpp.

Referenced by sqr().

dvar3_array sqr ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 136 of file f3arr2.cpp.

dvector sqrt ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 224 of file dvect6.cpp.

dvar_vector sqrt ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 362 of file fvar_a29.cpp.

dmatrix sqrt ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 220 of file dmat20.cpp.

dvar_matrix sqrt ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 219 of file fvar_m27.cpp.

d3_array sqrt ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr2c.cpp.

Referenced by acos(), asin(), atan2(), bounded_multivariate_normal(), bounded_multivariate_normal_mcmc(), check_choleski_decomp(), chol(), choleski_decomp(), choleski_decomp_error(), choleski_decomp_neghess_error(), choleski_decomp_positive(), choleski_decomp_trust_bound(), cholnew(), cmvbvu_(), cs_amd(), cumd_cauchy(), dafsqrt(), density_cauchy(), DF_dvsqrt(), df_ln_det_choleski(), dfcholeski_decomp(), dfcholeski_decomp_banded(), dfcholeski_decomp_banded_positive(), dfcholeski_decomp_positive(), dfcholeski_sparse(), dmultinom(), gasdev(), gauss_hermite(), gauss_legendre(), laplace_approximation_calculator::generate_antithetical_rvs(), get_eigen(), get_eigen_values(), get_eigenv(), get_initial_u(), get_inverse_sparse_hessian(), function_minimizer::hess_routine_noparallel_random_effects(), imtqlx(), inv_cumd_cauchy(), inv_cumd_norm_inner(), inv_cumd_norm_ln(), inv_cumd_t(), kludge_cumd_cauchy(), lbfgs_(), ln_det_choleski(), ln_det_choleski_error(), log_density_cauchy(), lower_triangular_choleski_decomp_positive(), function_minimizer::mcmc_routine(), mcstep_(), function_minimizer::monte_carlo_routine(), multifan(), multivariate_mixture(), mvbvu_(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), nllLognormal(), nllNormal(), norm(), normalized_gauss_hermite(), orthpoly(), orthpoly_constant_begin(), orthpoly_constant_begin_end(), pearson_residuals(), probing_bounded_multivariate_normal(), probing_bounded_multivariate_normal_mcmc(), quiet_choleski_decomp(), randn(), randpoisson(), read_hessian_matrix_and_scale1(), dfsdmat::restore(), robust_regression(), save_number_of_local_effects(), function_minimizer::sd_routine(), sgamma(), sqr(), sqrt(), sqrt_m32(), sqrt_m5(), sqrt_m52(), std_dev(), svd_mln(), svd_nlm(), tmpxchol1(), tri_dag(), tri_dagv(), var(), and varchol().

dvar3_array sqrt ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 119 of file f3arr2.cpp.

d4_array sqrt ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d4arr1.cpp.

dvar4_array sqrt ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file f4arr1.cpp.

d5_array sqrt ( const d5_array & x )

dvar5_array sqrt ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 34 of file f5arr1.cpp.

ivector square ( const ivector & x )

Definition at line 39 of file d3arr4.cpp.

dvariable& square ( const prevariable & v1 )

Description not yet available.

Parameters:

Definition at line 26 of file fvar_op7.cpp.

dvar_vector square ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 19 of file fvar_a44.cpp.

dvar_matrix square ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 41 of file fvar_op7.cpp.

dvar3_array square ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file f3arr6.cpp.

double std_dev ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 41 of file cranfill.cpp.

dvariable std_dev ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 43 of file fvar_a49.cpp.

int sub_unallocated ( const dvar_vector & m )

Description not yet available.

Parameters:

Definition at line 17 of file suballoc.cpp.

Referenced by sub_unallocated().

int sub_unallocated ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 28 of file suballoc.cpp.

int sub_unallocated ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 58 of file suballoc.cpp.

int sub_unallocated ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 88 of file suballoc.cpp.

int sub_unallocated ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 118 of file suballoc.cpp.

int sub_unallocated ( const dvector & m )

Description not yet available.

Parameters:

Definition at line 148 of file suballoc.cpp.

int sub_unallocated ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 159 of file suballoc.cpp.

int sub_unallocated ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 184 of file suballoc.cpp.

int sub_unallocated ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 209 of file suballoc.cpp.

int sub_unallocated ( const d5_array & m )

Description not yet available.

Parameters:

Definition at line 234 of file suballoc.cpp.

int sub_unallocated ( const ivector & m )

Description not yet available.

Parameters:

Definition at line 259 of file suballoc.cpp.

int sub_unallocated ( const imatrix & m )

Description not yet available.

Parameters:

Definition at line 270 of file suballoc.cpp.

int sub_unallocated ( const i3_array & m )

Description not yet available.

Parameters:

Definition at line 295 of file suballoc.cpp.

int sub_unallocated ( const i4_array & m )

Description not yet available.

Parameters:

Definition at line 320 of file suballoc.cpp.

AD_LONG_INT sum ( const lvector & )

double sum ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 17 of file dvect12.cpp.

int sum ( const ivector & v )

Return integer sum of all the elements in ivector v.

Parameters:

v	integer vector

Definition at line 23 of file ivect6.cpp.

int sum ( const imatrix & m )

Description not yet available.

Parameters:

Definition at line 18 of file imat7.cpp.

double sum ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 74 of file dvect12.cpp.

double sum ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file d3arr.cpp.

Referenced by function_minimizer::adamoeba(), ageLengthKey(), ALK(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), det(), dgamma(), dlnorm(), dmultinom(), dmvlogistic(), dnorm(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), dstudent_t(), dv_xminuseq(), dv_xpluseq(), ivector::fill_multinomial(), dvector::fill_multinomial(), lvector::fill_multinomial(), get_ft(), function_minimizer::get_hybrid_monte_carlo_value(), gser(), inv(), function_minimizer::likeprof_routine(), ln_det(), logitProp(), lower_triangular_solve_trans(), lubksb(), ludcmp(), ludcmp_det(), ludcmp_index(), mean(), multifan(), neff(), nllBeta(), nllBinomial(), nllDirichlet(), nllGamma(), nllInverseGamma(), nllLognormal(), nllLognormal2(), nllMultiNomial(), nllNegativeBinomial(), nllPoisson(), normalize_p(), operator*(), orthpoly(), orthpoly_constant_begin(), orthpoly_constant_begin_end(), padsum(), pearson_residuals(), print_hist_data(), function_minimizer::pvm_master_get_monte_carlo_value(), rdirichlet(), rmvlogistic(), robust_regression(), rowsum(), function_minimizer::sd_routine(), solve(), solve_trans(), sum(), and unique().

double sum ( const d4_array & m )

Description not yet available.

Parameters:

Definition at line 45 of file d4arr.cpp.

double sum ( const d5_array & m )

Description not yet available.

Parameters:

Definition at line 18 of file d5arr.cpp.

double sum ( const d6_array & m )

Description not yet available.

Parameters:

Definition at line 421 of file d6arr.cpp.

double sum ( const d7_array & m )

Description not yet available.

Parameters:

Definition at line 44 of file d7arr1.cpp.

dvariable sum ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 115 of file f3arr1.cpp.

dvariable sum ( const dvar4_array & m )

Description not yet available.

Parameters:

Definition at line 77 of file f4arr1.cpp.

dvariable sum ( const dvar5_array & m )

Description not yet available.

Parameters:

Definition at line 17 of file f5arr1.cpp.

dvariable sum ( const dvar6_array & m )

Description not yet available.

Parameters:

Definition at line 96 of file f6arr1.cpp.

dvariable sum ( const dvar7_array & m )

Description not yet available.

Parameters:

Definition at line 96 of file f7arr1.cpp.

double sumsq ( const d3_array & )

Definition at line 176 of file d3arr2a.cpp.

dvariable sumsq ( const dvar3_array & m )

Definition at line 45 of file f3arr2.cpp.

double sumsq ( const banded_symmetric_dmatrix & B )

dvariable sumsq ( const banded_symmetric_dvar_matrix & B )

Definition at line 716 of file fvar_m40.cpp.

int sumsq ( const ivector & v )

Definition at line 373 of file ivector.cpp.

dmatrix symmetrize ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 17 of file dmat12.cpp.

Referenced by eigenvalues(), eigenvectors(), and function_minimizer::random_effects_maximization().

dvar_matrix symmetrize ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 80 of file fvar_m30.cpp.

dmatrix symmetrize ( const lower_triangular_dmatrix & T )

Description not yet available.

Parameters:

Definition at line 58 of file dmat36.cpp.

dvector tan ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 54 of file dvect6.cpp.

dvar_vector tan ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 266 of file fvar_a29.cpp.

dmatrix tan ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 110 of file dmat20.cpp.

dvar_matrix tan ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 163 of file fvar_m27.cpp.

d3_array tan ( const d3_array & m )

Description not yet available.

Parameters:

Definition at line 77 of file d3arr2a.cpp.

Referenced by AD_df1_tan(), AD_df2_tan(), AD_df3_tan(), dftinv(), param_init_bounded_vector::get_jacobian(), inv_cumd_cauchy(), randpoisson(), set_value_inv_mc(), tan(), and tan_address().

dvar3_array tan ( const dvar3_array & m )

Description not yet available.

Parameters:

Definition at line 153 of file f3arr2.cpp.

dvector tanh ( const dvector & v1 )

Description not yet available.

Parameters:

Definition at line 96 of file dvect6.cpp.

Referenced by tanh().

dvar_vector tanh ( const dvar_vector & v1 )

Description not yet available.

Parameters:

Definition at line 81 of file fvar_ar8.cpp.

dvar_matrix tensor_prod	(	const dvar_matrix &	a,
		const dvar_matrix &	b
	)

The tensor product of two dvar_matrixes.

Parameters:

a	first dvar_matrix
b	second dvar_matrix

Returns:: c a dvar_matrix of the tensor product.

Calcuates the tensor product of a and b. $C = A \otimes B$

Definition at line 24 of file tensprod.cpp.

void test_the_pointer ( void )

Definition at line 432 of file sgradclc.cpp.

Referenced by grad_stack::grad_stack().

void tracing_message	(	int	_traceflag,
		const char *	s
	)

Description not yet available.

Parameters:

Definition at line 79 of file newfmin.cpp.

Referenced by function_minimizer::computations(), function_minimizer::computations1(), fmm::fmin(), and function_minimizer::minimize().

void tracing_message	(	int	_traceflag,
		const char *	s,
		int *	pn
	)

Description not yet available.

Parameters:

Definition at line 94 of file newfmin.cpp.

void tracing_message	(	int	_traceflag,
		const char *	s,
		double *	pd
	)

Description not yet available.

Parameters:

Definition at line 109 of file newfmin.cpp.

void tracing_message	(	int	_traceflag,
		const char *	s,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 124 of file newfmin.cpp.

imatrix trans ( const imatrix & m1 )

Description not yet available.

Parameters:

Definition at line 32 of file imat3.cpp.

dvar_matrix use_shape ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 73 of file fvar_m27.cpp.

Referenced by cos(), elem_div(), elem_prod(), exp(), log(), operator*(), operator+(), operator-(), pow(), sin(), sqr(), sqrt(), and tan().

dmatrix use_shape ( const dmatrix & m )

Description not yet available.

Parameters:

Definition at line 90 of file fvar_m27.cpp.

double& value ( const prevariable & v1 ) [inline]

Definition at line 1449 of file fvar.hpp.

dmatrix value ( const dvar_matrix & m )

Description not yet available.

Parameters:

Definition at line 22 of file fvar_m13.cpp.

d3_array value ( const dvar3_array & ar )

Description not yet available.

Parameters:

Definition at line 17 of file f3arr3.cpp.

banded_symmetric_dmatrix value ( const banded_symmetric_dvar_matrix & v )

Description not yet available.

Parameters:

Definition at line 114 of file fvar_m40.cpp.

double var ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 28 of file cranfill.cpp.

Referenced by dnorm(), param_init_bounded_vector::mc_scale(), param_init_bounded_matrix::mc_scale(), neff(), and pearson_residuals().

dvariable var ( const dvar_vector & v )

Description not yet available.

Parameters:

Definition at line 28 of file fvar_a49.cpp.

dvector VEC ( const dmatrix & _m )

The VEC operator concatenates the columns of matrix M into a column vector.

Parameters:

matrix M

Definition at line 17 of file dmat29.cpp.

dvar_vector VEC ( const dvar_matrix & _m )

The VEC operator concatenates the columns of matrix M into a column vector.

Parameters:

matrix M

Definition at line 17 of file fvar_m43.cpp.

pre_zero_print zero_print ( const dvector & v )

Description not yet available.

Parameters:

Definition at line 62 of file dvect23.cpp.

Variable Documentation

exitptr ad_exit

Definition at line 52 of file gradstrc.cpp.

int ad_kill_flag

Definition at line 23 of file newdar.cpp.

Referenced by df_check_derivative_values(), df_check_derivative_values_indexed(), and df_check_derivative_values_indexed_break().

int just_to_link_fvar1

(* $Id$)

Classes

Defines

Typedefs

Functions

Variables

Detailed Description

Define Documentation

Typedef Documentation

Function Documentation

Variable Documentation