ADMB Documentation  11.5.3197
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df1b2fun.h File Reference

(* $Id$)

Description not yet available. More...

#include <adpool.h>
#include <fvar.hpp>
#include <sys/stat.h>
#include <stddef.h>
#include <fcntl.h>
#include <df32fun.h>
#include <df1b2fnl.h>
#include <df3fun.h>

Go to the source code of this file.

Classes

class  ad_dstar
 Description not yet available. More...
class  constant_df1b2quadratic_re_penalty
 Description not yet available. More...
class  constant_quadratic_re_penalty
 Description not yet available. More...
class  df1b23array
 Description not yet available. More...
class  df1b2_gradlist
 Description not yet available. More...
struct  df1b2_header
 Description not yet available. More...
class  df1b2_header_ptr_vector
 Description not yet available. More...
class  df1b2_init_bounded_dev_vector
 Description not yet available. More...
class  df1b2_init_bounded_matrix
 Description not yet available. More...
class  df1b2_init_bounded_number
 Description not yet available. More...
class  df1b2_init_bounded_number_vector
 Description not yet available. More...
class  df1b2_init_bounded_vector
 Description not yet available. More...
class  df1b2_init_matrix
 Description not yet available. More...
class  df1b2_init_number
 Description not yet available. More...
class  df1b2_init_number_vector
 Description not yet available. More...
class  df1b2_init_vector
 Description not yet available. More...
class  df1b2function1
 This is a function object for a function of one variable which stores the functions which calculate the first second and third derivatives. More...
class  df1b2function2
 Description not yet available. More...
class  df1b2function_tweaker
 Description not yet available. More...
class  df1b2matrix
 Description not yet available. More...
class  df1b2quadratic_prior
 Description not yet available. More...
class  df1b2quadratic_re_penalty
 Description not yet available. More...
class  df1b2variable
 Description not yet available. More...
class  df1b2vector
 Description not yet available. More...
class  df1b2vector_header
 Description not yet available. More...
class  do_naught_kludge
 Description not yet available. More...
class  double_ptr_vector
 Description not yet available. More...
class  fixed_list_entry
 Description not yet available. More...
class  fixed_smartlist
 Description not yet available. More...
class  fixed_smartlist2
 Description not yet available. More...
class  init_df1b2variable
 Description not yet available. More...
class  init_df1b2vector
 Description not yet available. More...
class  initial_df1b2params
 Description not yet available. More...
class  mydf1b2function2
 Description not yet available. More...
class  normal_df1b2quadratic_prior
 Description not yet available. More...
class  normal_quadratic_prior
 Description not yet available. More...
class  predf1b2vector
 Description not yet available. More...
class  quadratic_prior
 Description not yet available. More...
class  quadratic_re_penalty
 Description not yet available. More...
class  random_effects_bounded_vector_info
 Description not yet available. More...
class  re_df1b2_init_bounded_vector
 Description not yet available. More...
class  re_objective_function_value
class  smartlist
 Description not yet available. More...
class  style_flag_class
 Description not yet available. More...
class  test_smartlist
 Description not yet available. More...
class  twointsandptr
 Description not yet available. More...

Defines

#define AD_ALLOCATE(ptr, type, n, classname)
#define ADUNCONST(type, obj)   type & obj = (type&) _##obj;
#define USE_BARD_PEN

Typedefs

typedef void(** ADprfptr )(void)
typedef void(* ADrfptr )(void)
typedef initial_df1b2params * P_INITIAL_DF1B2PARAMS
typedef void *& vreference

Functions

int active (const df1b2_init_vector &x)
 Description not yet available.
int active (const df1b2_init_number &x)
 Description not yet available.
int active (const df1b2_init_matrix &x)
 Description not yet available.
void ADMB_getcallindex (const df1b2variable &x)
 Description not yet available.
void ADMB_getcallindex (const df1b2vector &x)
 Description not yet available.
void ADMB_getcallindex (const df1b2matrix &x)
 Description not yet available.
int adptr_diff (void *x, void *y)
int allocated (const df1b2_init_vector &)
 Description not yet available.
int allocated (const df1b2vector &)
 Description not yet available.
int allocated (const df1b2_init_matrix &)
 Description not yet available.
df1b2variable asin (const df1b2variable &xx)
 Description not yet available.
df1b2variable atan (const df1b2variable &x)
 Description not yet available.
df1b2variable beta_deviate (const df1b2variable &_x, const df1b2variable &_a, const df1b2variable &_b, double eps=1.e-7)
 Description not yet available.
df1b2variable betai (const df1b2variable &a, const df1b2variable &b, double x, int maxit=100)
 Incomplete beta function for df1b2variable objects.
df1b2variable bounded_cumd_norm (const df1b2variable &_x, double beta)
df1b2variable bounder (const df1b2variable &x, double min, double max, double scale)
 Description not yet available.
df1b2variable boundp (const df1b2variable &x, double fmin, double fmax)
 Description not yet available.
df1b2variable boundp (const df1b2variable &x, double fmin, double fmax, const df1b2variable &_fpen)
 Bound model parameter.
df1b2variable boundp (const df1b2variable &x, double fmin, double fmax, const df1b2variable &_fpen, double s)
 Bound and scale model parameter.
double calculate_importance_sample (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample (const dvector &x, const dvector &u0, const banded_symmetric_dmatrix &bHess, const dvector &_xadjoint, const dvector &_uadjoint, const banded_symmetric_dmatrix &_bHessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample_block_diagonal (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample_block_diagonal_funnel (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample_block_diagonal_option2 (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample_block_diagonal_option_antithetical (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double calculate_importance_sample_shess (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
void check_pool_depths ()
 Description not yet available.
dmatrix check_second_derivatives (const init_df1b2vector &x)
 Description not yet available.
void check_shape (const df1b2vector &x, const df1b2vector &y, const char *s)
 Description not yet available.
void check_shape (const df1b2vector &x, const dvector &y, const char *s)
 Description not yet available.
void check_shape (const dvector &x, const df1b2vector &y, const char *s)
 Description not yet available.
void check_shape (const df1b2vector &x, const df1b2matrix &y, const char *s)
 Description not yet available.
d3_array check_third_derivatives (const init_df1b2vector &x)
 Description not yet available.
void checkidentiferstring (const char *ids, test_smartlist &list)
 Description not yet available.
df1b2matrix choleski_decomp (const df1b2matrix &M)
 Description not yet available.
df1b2matrix choleski_decomp_extra (const df1b2matrix &M)
df1b2vector colsum (const df1b2matrix &)
 Description not yet available.
df1b2vector column (const df1b2matrix &, int i)
 Description not yet available.
df1b2variable cos (const df1b2variable &x)
 Description not yet available.
df1b2vector cos (const df1b2vector &x)
 Description not yet available.
df1b2variable cube (const df1b2variable &x)
 Description not yet available.
df1b2vector cube (const df1b2vector &x)
 Description not yet available.
df1b2variable cumd_exponential (const df1b2variable &x)
 Description not yet available.
df1b2variable cumd_norm (const df1b2variable &_x)
void df1b2_gradcalc1 (void)
 Description not yet available.
df1b2variable dflogistic (double a, double b, const df1b2variable &x)
 Description not yet available.
df1b2variable dfposfun (const df1b2variable &x, const double eps)
 Description not yet available.
df1b2variable div (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
double do_gauss_hermite_block_diagonal (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
double do_gauss_hermite_block_diagonal_multi (const dvector &x, const dvector &u0, const dmatrix &Hess, const dvector &_xadjoint, const dvector &_uadjoint, const dmatrix &_Hessadjoint, function_minimizer *pmin)
 Description not yet available.
df1b2matrix elem_div (const df1b2matrix &x, const df1b2matrix &y)
 Description not yet available.
df1b2matrix elem_div (const dmatrix &x, const df1b2matrix &y)
 Description not yet available.
df1b2matrix elem_div (const df1b2matrix &x, const dmatrix &y)
 Description not yet available.
df1b2vector elem_div (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector elem_div (const dvector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector elem_div (const df1b2vector &x, const dvector &y)
 Description not yet available.
df1b2matrix elem_prod (const df1b2matrix &x, const df1b2matrix &y)
 Description not yet available.
df1b2matrix elem_prod (const dmatrix &x, const df1b2matrix &y)
 Description not yet available.
df1b2matrix elem_prod (const df1b2matrix &x, const dmatrix &y)
 Description not yet available.
df1b2vector elem_prod (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector elem_prod (const df1b2vector &x, const dvector &y)
 Description not yet available.
df1b2vector elem_prod (const dvector &x, const df1b2vector &y)
 Description not yet available.
double evaluate_function (const dvector &x, function_minimizer *pfmin)
 Description not yet available.
double evaluate_function (double &fval, const dvector &x, function_minimizer *pfmin)
 Description not yet available.
double evaluate_function (double &fval, const dvector &x, const dvector &, function_minimizer *pfmin)
 Description not yet available.
double evaluate_function_no_derivatives (const dvector &x, function_minimizer *pfmin)
 Description not yet available.
double evaluate_function_quiet (const dvector &x, function_minimizer *pfmin)
 Description not yet available.
dvector evaluate_function_with_quadprior (const dvector &x, int usize, function_minimizer *pfmin)
 Description not yet available.
df1b2variable exp (const df1b2variable &x)
 Description not yet available.
df1b2vector exp (const df1b2vector &x)
 Description not yet available.
df1b2matrix exp (const df1b2matrix &M)
 Description not yet available.
df1b2matrix expm (const df1b2matrix &A)
 Matrix exponential.
df1b2variable fabs (const df1b2variable &x)
 Description not yet available.
df1b2vector fabs (const df1b2vector &t1)
 Description not yet available.
df1b2variable factln (const df1b2variable &n)
 Description not yet available.
df1b2vector first_difference (const df1b2vector &x)
 Description not yet available.
df1b2variable fourth (const df1b2variable &x)
df1b2variable gamma_density (const df1b2variable &_x, double r, double mu)
 Description not yet available.
df1b2variable gamma_density (const df1b2variable &_x, const df1b2variable &_r, const df1b2variable &_mu)
 Description not yet available.
df1b2variable gamma_deviate (const df1b2variable &_x, const df1b2variable &_a)
 Description not yet available.
df1b2variable gammln (const df1b2variable &_xx)
 Description not yet available.
df1b2vector gammln (const df1b2vector &_xx)
 Description not yet available.
dmatrix get_hessian (const init_df1b2vector &x)
 Description not yet available.
df1b2variable inv (const df1b2variable &x)
 Description not yet available.
df1b2variable inv_cumd_beta_stable (const df1b2variable &a, const df1b2variable &b, const df1b2variable &x, double eps=1.e-7)
df1b2variable inv_cumd_cauchy (const df1b2variable &n)
df1b2variable inv_cumd_exponential (const df1b2variable &y)
 Description not yet available.
df1b2variable inv_cumd_gamma (const df1b2variable &_y, const df1b2variable &_a)
 Description not yet available.
double inv_cumd_gamma (double y, double _a)
df1b2variable inv_cumd_normal_logistic_mixture (const df1b2variable &_x, double _a)
 Description not yet available.
df1b2variable inv_cumd_normal_mixture (const df1b2variable &_x, double _a)
 Description not yet available.
df1b2variable inv_cumd_t (const df1b2variable &n, const df1b2variable &u, double eps=1.e-7)
 Description not yet available.
df1b2variable lgamma2 (const df1b2variable &_x)
df1b2variable ln_det (const df1b2matrix &m1)
df1b2variable ln_det (df1b2matrix &M, int &sgn)
df1b2variable log (const df1b2variable &x)
 Description not yet available.
df1b2vector log (const df1b2vector &x)
 Description not yet available.
df1b2matrix log (const df1b2matrix &M)
 Description not yet available.
df1b2variable log_comb (const df1b2variable &n, double k)
 Description not yet available.
df1b2variable log_comb (const df1b2variable &n, const df1b2variable &k)
 Description not yet available.
df1b2variable log_comb (double n, const df1b2variable &k)
 Description not yet available.
df1b2variable log_density_poisson (double x, const df1b2variable &mu)
 Log Poisson density; random effects objects.
df1b2variable log_der_logistic (double a, double b, const df1b2variable &x)
 Description not yet available.
df1b2variable log_gamma_density (const df1b2variable &_x, double r, double mu)
 Description not yet available.
df1b2variable log_gamma_density (const df1b2variable &_x, const df1b2variable &_r, const df1b2variable &_mu)
 Description not yet available.
df1b2variable log_negbinomial_density (double x, const df1b2variable &mu, const df1b2variable &tau)
df1b2variable logistic (double a, double b, const df1b2variable &x)
 Description not yet available.
df1b2variable lower_triangular_ln_det (const df1b2matrix &m)
 Description not yet available.
df1b2variable lower_triangular_ln_det (const df1b2matrix &m, int &sgn)
 Description not yet available.
df1b2vector lower_triangular_solve (const df1b2matrix &m, const df1b2vector &v)
 Description not yet available.
df1b2vector lower_triangular_solve_trans (const df1b2matrix &m, const df1b2vector &v)
 Description not yet available.
df1b2variable max (const df1b2vector &t1)
 Description not yet available.
df1b2variable mean (const df1b2vector &x)
 Description not yet available.
df1b2variable mean (const df1b2matrix &x)
 Description not yet available.
void memcpy (test_smartlist &, void *, const size_t nsize)
 memcpy for test_smartlist
void memcpy (void *, test_smartlist &, const size_t nsize)
 memcpy for test_smartlist
df1b2variable mfexp (const df1b2variable &x)
 Description not yet available.
df1b2variable mfexp (const df1b2variable &x, double b)
 Description not yet available.
df1b2vector mfexp (const df1b2vector &x)
 Description not yet available.
df1b2matrix mfexp (const df1b2matrix &M)
 Description not yet available.
df1b2variable mult_add (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable mypow (const df1b2variable &x, double y)
 Description not yet available.
void ncount_checker (int ncount, int ncount_check)
df1b2variable norm (const df1b2vector &x)
 Description not yet available.
df1b2variable norm (const df1b2matrix &x)
 Description not yet available.
df1b2variable norm2 (const df1b2vector &x)
 Description not yet available.
df1b2variable norm2 (const df1b2matrix &x)
 Description not yet available.
df1b2variable norm_to_gamma (const df1b2variable &v, const df1b2variable &alpha, double bound=0.999999)
 Description not yet available.
df1b2variable operator* (const df1b2variable &x, double y)
 Description not yet available.
df1b2variable operator* (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator* (double x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator* (double, const df1b2vector &y)
 Description not yet available.
df1b2vector operator* (const df1b2vector &y, const double)
 Description not yet available.
df1b2variable operator* (const df1b2vector &y, const dvector &)
 Description not yet available.
df1b2variable operator* (const dvector &, const df1b2vector &y)
 Description not yet available.
df1b2vector operator* (const df1b2vector &y, const df1b2variable &)
 Description not yet available.
df1b2vector operator* (const df1b2variable &, const df1b2vector &y)
 Description not yet available.
df1b2matrix operator* (const df1b2matrix &M, const df1b2variable &x)
 Description not yet available.
df1b2matrix operator* (const dmatrix &M, const df1b2variable &x)
 Description not yet available.
df1b2vector operator* (const dmatrix &M, const df1b2vector &x)
 Description not yet available.
df1b2matrix operator* (const df1b2variable &x, const dmatrix &M)
 Description not yet available.
df1b2matrix operator* (const df1b2matrix &M, const df1b2matrix &x)
 Description not yet available.
df1b2matrix operator* (const dmatrix &M, const df1b2matrix &x)
df1b2matrix operator* (const df1b2variable &, const df1b2matrix &M)
 Description not yet available.
df1b2matrix operator* (const df1b2matrix &M, const double x)
 Description not yet available.
df1b2matrix operator* (const double, const df1b2matrix &M)
 Description not yet available.
df1b2vector operator* (const df1b2variable &y, const dvector &)
 Description not yet available.
df1b2vector operator* (const dvector &x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator* (const dvector &, const df1b2matrix &)
 Vector and Matrix Multiplication.
df1b2vector operator* (const df1b2vector &, const df1b2matrix &)
 Vector and Matrix Multiplication.
df1b2vector operator* (const df1b2vector &, const dmatrix &)
 Vector and Matrix Multiplication.
df1b2variable operator* (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator* (const df1b2matrix &M, const df1b2vector &x)
 Description not yet available.
df1b2vector operator* (const df1b2matrix &M, const dvector &x)
 Description not yet available.
df1b2variable operator+ (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator+ (double x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator+ (const df1b2variable &x, double y)
 Description not yet available.
df1b2matrix operator+ (const df1b2matrix &M, const df1b2variable &x)
 Description not yet available.
df1b2matrix operator+ (const df1b2matrix &M, const df1b2matrix &N)
 Description not yet available.
df1b2matrix operator+ (const df1b2matrix &M, const dmatrix &N)
 Description not yet available.
df1b2matrix operator+ (const dmatrix &M, const df1b2matrix &x)
 Description not yet available.
df1b2matrix operator+ (const df1b2variable &, const df1b2matrix &M)
 Description not yet available.
df1b2vector operator+ (const df1b2variable &, const dvector &M)
 Description not yet available.
df1b2matrix operator+ (const df1b2matrix &M, const double x)
 Description not yet available.
df1b2matrix operator+ (const double, const df1b2matrix &M)
 Description not yet available.
df1b2vector operator+ (const df1b2variable &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator+ (double x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator+ (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator+ (const df1b2vector &x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator+ (const dvector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator+ (const df1b2vector &y, const dvector &x)
 Description not yet available.
df1b2vector operator+ (const dvector &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator- (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator- (double x, const df1b2variable &y)
df1b2variable operator- (const df1b2variable &x, double y)
df1b2matrix operator- (const df1b2matrix &M, const dmatrix &x)
 Description not yet available.
df1b2matrix operator- (const df1b2matrix &M, const double x)
df1b2matrix operator- (const df1b2matrix &M, const df1b2variable &x)
df1b2matrix operator- (const df1b2matrix &M, const df1b2matrix &x)
 Description not yet available.
df1b2matrix operator- (const dmatrix &M, const df1b2matrix &x)
 Description not yet available.
df1b2matrix operator- (const df1b2variable &, const df1b2matrix &M)
 Description not yet available.
df1b2matrix operator- (const double, const df1b2matrix &M)
 Description not yet available.
df1b2vector operator- (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator- (const dvector &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator- (const df1b2variable &x, const df1b2vector &y)
 Description not yet available.
df1b2vector operator- (const df1b2variable &x, const dvector &y)
 Description not yet available.
df1b2vector operator- (const df1b2vector &x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator- (const df1b2vector &x, const dvector &y)
 Description not yet available.
df1b2vector operator- (const dvector &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator- (const df1b2variable &x)
 Description not yet available.
df1b2vector operator- (const df1b2vector &x)
 Description not yet available.
df1b2variable operator/ (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable operator/ (const df1b2variable &x, double y)
 Description not yet available.
df1b2variable operator/ (double x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator/ (const df1b2variable &y, const df1b2vector &x)
 Description not yet available.
df1b2vector operator/ (const double &y, const df1b2vector &x)
 Description not yet available.
df1b2vector operator/ (const df1b2vector &x, const df1b2variable &y)
 Description not yet available.
df1b2vector operator/ (const df1b2vector &x, double y)
 Description not yet available.
df1b2vector operator/ (const dvector &x, const df1b2variable &y)
 Description not yet available.
ostream & operator<< (const ostream &_os, const df1b2variable &_x)
 Description not yet available.
ostream & operator<< (const ostream &_os, const df1b2vector &_x)
 Description not yet available.
ostream & operator<< (const ostream &_os, const df1b2matrix &_x)
 Description not yet available.
ostream & operator<< (const ostream &ostr, const df1b2_init_number_vector &z)
 Description not yet available.
ostream & operator<< (const ostream &ostr, const init_df1b2vector &z)
 Description not yet available.
ostream & operator<< (const ostream &ostr, const df1b2_init_bounded_number_vector &z)
 Description not yet available.
ofstream & operator<< (const ofstream &_s, const nested_calls_shape &m)
df1b2matrix outer_prod (const df1b2vector &x, const df1b2vector &y)
 Description not yet available.
df1b2variable posfun (const df1b2variable &x, const double eps)
 Description not yet available.
df1b2variable posfun (const df1b2variable &x, const double eps, const df1b2variable &_pen)
 Description not yet available.
df1b2vector posfun (const df1b2vector &x, double eps, const df1b2variable &_pen)
 Description not yet available.
df1b2variable posfun2 (const df1b2variable &x, const double eps, const df1b2variable &_pen)
 Description not yet available.
df1b2variable pow (const df1b2variable &x, const df1b2variable &y)
 Description not yet available.
df1b2variable pow (const df1b2variable &x, double y)
 Description not yet available.
df1b2variable pow (double x, const df1b2variable &y)
 Description not yet available.
df1b2vector pow (const df1b2vector &x, double y)
 Description not yet available.
df1b2vector pow (const df1b2vector &v, const df1b2variable &x)
 Description not yet available.
df1b2vector pow (const df1b2vector &v, const df1b2vector &x)
 Description not yet available.
df1b2vector pow (const df1b2variable &v, const df1b2vector &x)
 Description not yet available.
df1b2vector pow (df1b2vector const &_x, dvector const &v)
 raise x to the power v.
df1b2vector pow (double v, const df1b2vector &x)
 Description not yet available.
df1b2vector pow (const dvector &x, const df1b2vector &a)
 raise x to the power a.
df1b2vector pow (const dvector &x, const df1b2variable &a)
 raise x to the power a.
void print_derivatives (const adstring &, double f, double df, double d2f, double d3f, int bflag=0)
 Description not yet available.
void print_derivatives (const adstring &, double f, double df1, double df2, double df11, double df12, double df22, double df111, double df112, double df122, double df222, int bflag=0)
 Description not yet available.
void print_derivatives (df1b2_header *px, const char *s, int bflag=0)
 Description not yet available.
void print_dot_derivatives (df1b2_header *px, const char *s)
void print_is_diagnostics (laplace_approximation_calculator *lapprox)
void read (const test_smartlist &, void *, int nsize)
void read_pass1_1 (void)
 Description not yet available.
void read_pass1_2 (void)
 Description not yet available.
df1b2variable robust_normal_logistic_mixture_deviate (const df1b2variable &x, double spread=3.0)
 Description not yet available.
df1b2variable robust_normal_mixture_deviate (const df1b2variable &x, double spread=3.0)
 Description not yet available.
df1b2vector rowsum (const df1b2matrix &)
 Description not yet available.
void set_dependent_variable (const df1b2variable &_x)
 Description not yet available.
void set_value (const df1b2variable &u, const init_df1b2vector &x, const int &_ii, double fmin, double fmax, const df1b2variable &fpen)
 Description not yet available.
void set_value (const df1b2variable &u, const init_df1b2vector &x, const int &_ii, double fmin, double fmax, const df1b2variable &fpen, double s)
df1b2variable sfabs (const df1b2variable &x)
df1b2variable sin (const df1b2variable &x)
 Description not yet available.
df1b2vector sin (const df1b2vector &x)
 Description not yet available.
int size_count (const df1b2matrix &x)
 Description not yet available.
int size_count (const df1b2vector &x)
 Description not yet available.
df1b2vector solve (const df1b2matrix &x, const dvector &)
df1b2vector solve (const df1b2matrix &x, const df1b2vector &)
dvar_vector solve (const named_dvar_matrix &, const random_effects_vector &)
 Description not yet available.
df1b2vector solve (df1b2matrix &M, df1b2vector &v, const df1b2variable &ln_det)
df1b2vector solve (df1b2matrix &M, df1b2vector &v, const df1b2variable &ln_det, const int &sgn)
df1b2matrix solve (const df1b2matrix &aa, const df1b2matrix &tz, df1b2variable ln_unsigned_det, df1b2variable &sign)
 Description not yet available.
df1b2matrix solve (const df1b2matrix &aa, const df1b2matrix &tz)
 Description not yet available.
df1b2vector solve (const df1b2matrix &aa, const df1b2vector &z, const df1b2variable &ld, df1b2variable &sign)
df1b2variable sqrt (const df1b2variable &x)
 Description not yet available.
df1b2vector sqrt (const df1b2vector &x)
 Description not yet available.
df1b2variable square (const df1b2variable &x)
 Description not yet available.
df1b2matrix square (const df1b2matrix &x)
 Description not yet available.
df1b2vector square (const df1b2vector &x)
 Description not yet available.
df1b2variable sum (const df1b2vector &x)
 Description not yet available.
df1b2variable sum (const df1b2matrix &x)
 Description not yet available.
df1b2variable sumsq (const df1b2vector &x)
df1b2variable sumsq (const df1b2matrix &x)
df1b2variable tan (const df1b2variable &x)
 Description not yet available.
df1b2vector tan (const df1b2vector &x)
 Description not yet available.
df1b2matrix trans (const df1b2matrix &M)
 Description not yet available.
double & value (const df1b2variable &_x)
 Description not yet available.
dvector value (const df1b2vector &_x)
 Description not yet available.
dmatrix value (const df1b2matrix &_x)
 Description not yet available.
int withinbound (int lb, int n, int ub)
void write (const test_smartlist &, void *, int nsize)

Variables

char AD_allocation_error_message []
df1b2_gradlist * f1b2gradlist
df1b2_gradlist ** f1b2gradlist_stack
df1b2_gradlist * globalf1b2gradlist
df1b2_gradlist * localf1b2gradlist
int make_sure_df1b2fun_gets_linked
int max_num_init_df1b2variable

Detailed Description

Description not yet available.

Definition in file df1b2fun.h.

Define Documentation

#define AD_ALLOCATE (   ptr,
  type,
  n,
  classname 
)
Value:
if ( (ptr = new type[n])==NULL) \
  { \
    cerr << AD_allocation_error_message << "classname" << endl; \
    ad_exit(1); \
  }

Definition at line 166 of file df1b2fun.h.

Referenced by fixed_smartlist::allocate(), fixed_smartlist2::allocate(), df1b2vector::noallocate(), and smartlist::smartlist().

#define ADUNCONST (   type,
  obj 
)    type & obj = (type&) _##obj;

Definition at line 175 of file df1b2fun.h.

#define USE_BARD_PEN

Definition at line 63 of file df1b2fun.h.

Typedef Documentation

typedef void(** ADprfptr)(void)

Definition at line 838 of file df1b2fun.h.

typedef void(* ADrfptr)(void)

Definition at line 572 of file df1b2fun.h.

typedef initial_df1b2params* P_INITIAL_DF1B2PARAMS

Definition at line 1359 of file df1b2fun.h.

typedef void* & vreference

Definition at line 132 of file df1b2fun.h.

Function Documentation

int active ( const df1b2_init_vector &  x)

Description not yet available.

Parameters:

Definition at line 730 of file df1b2f15.cpp.

int active ( const df1b2_init_number &  x)

Description not yet available.

Parameters:

Definition at line 742 of file df1b2f15.cpp.

int active ( const df1b2_init_matrix &  x)

Description not yet available.

Parameters:

Definition at line 754 of file df1b2f15.cpp.

void ADMB_getcallindex ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 834 of file f1b2vc1.cpp.

void ADMB_getcallindex ( const df1b2vector &  x)

Description not yet available.

Parameters:

Definition at line 843 of file f1b2vc1.cpp.

void ADMB_getcallindex ( const df1b2matrix &  x)

Description not yet available.

Parameters:

Definition at line 852 of file f1b2vc1.cpp.

int adptr_diff ( void *  x,
void *  y 
)

Definition at line 110 of file df1b2fn2.cpp.

Referenced by df1b2vector::allocate(), read_pass1_1(), read_pass1_1_dv(), read_pass1_1x(), read_pass1_eq_1(), read_pass1_init_1(), read_pass2_1(), read_pass2_1_dvdv(), read_pass2_1_dvdvdv(), read_pass2_1_prod(), read_pass2_1_prod_vector(), read_pass2_1_prodc1(), read_pass2_1_prodc2(), read_tilde_values_2(), test_smartlist::write_buffer(), fixed_smartlist::write_buffer(), fixed_smartlist2::write_buffer(), fixed_smartlist::write_buffer_one_less(), fixed_smartlist2::write_buffer_one_less(), df1b2_gradlist::write_pass1(), df1b2_gradlist::write_pass1_eq(), df1b2_gradlist::write_pass1_initialize(), df1b2_gradlist::write_pass1_minus(), df1b2_gradlist::write_pass1_minuscv(), df1b2_gradlist::write_pass1_minuseq(), df1b2_gradlist::write_pass1_minusvc(), df1b2_gradlist::write_pass1_pluseq(), df1b2_gradlist::write_pass1_prod(), df1b2_gradlist::write_pass1_sum(), df1b2_gradlist::write_pass1x(), and df1b2_gradlist::write_save_pass2_tilde_values().

int allocated ( const df1b2_init_vector &  _x)

Description not yet available.

Parameters:

Definition at line 217 of file df1b2f25.cpp.

int allocated ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 207 of file df1b2f25.cpp.

int allocated ( const df1b2_init_matrix &  _x)

Description not yet available.

Parameters:

Definition at line 227 of file df1b2f25.cpp.

df1b2variable asin ( const df1b2variable &  _xx)

Description not yet available.

Parameters:

Definition at line 18 of file df1b2f26.cpp.

df1b2variable atan ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 416 of file df1b2fun.cpp.

df1b2variable beta_deviate ( const df1b2variable &  _a,
const df1b2variable &  _b,
const df1b2variable &  _x,
double  eps 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2betdev.cpp.

df1b2variable betai ( const df1b2variable &  a,
const df1b2variable &  b,
double  x,
int  maxit 
)

Incomplete beta function for df1b2variable objects.

Parameters:
a$a$
b$b$
x$x$
maxitMaximum number of iterations for the continued fraction approximation in betacf.
Returns:
Incomplete beta function $I_x(a,b)$



The implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter 2

Definition at line 29 of file df1b2bet.cpp.

df1b2variable bounded_cumd_norm ( const df1b2variable &  _x,
double  beta 
)

Definition at line 808 of file df3fun.cpp.

df1b2variable bounder ( const df1b2variable &  x,
double  min,
double  max,
double  scale 
)

Description not yet available.

Parameters:
x
min
max
mscale

Definition at line 20 of file df1b2-separable/bounder.cpp.

df1b2variable boundp ( const df1b2variable &  x,
double  fmin,
double  fmax 
)

Description not yet available.

Parameters:

Definition at line 521 of file df1b2f15.cpp.

df1b2variable boundp ( const df1b2variable &  x,
double  fmin,
double  fmax,
const df1b2variable &  _fpen 
)

Bound model parameter.

Parameters:
xVariable to bound
fminLower value
fmaxUpper value
_fpenPenalty to apply

Definition at line 418 of file df1b2f15.cpp.

df1b2variable boundp ( const df1b2variable &  _x,
double  fmin,
double  fmax,
const df1b2variable &  _fpen,
double  s 
)

Bound and scale model parameter.

Parameters:
xVariable to bound
fminLower value
fmaxUpper value
_fpenPenalty to apply

Definition at line 469 of file df1b2f15.cpp.

double calculate_importance_sample ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2imp.cpp.

double calculate_importance_sample ( const dvector &  x,
const dvector &  u0,
const banded_symmetric_dmatrix &  bHess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const banded_symmetric_dmatrix &  _bHessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2im2.cpp.

double calculate_importance_sample_block_diagonal ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2im3.cpp.

double calculate_importance_sample_block_diagonal_funnel ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2im3f.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

double calculate_importance_sample_block_diagonal_option2 ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2im4.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

double calculate_importance_sample_block_diagonal_option_antithetical ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 20 of file df1b2im5.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

double calculate_importance_sample_shess ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 21 of file df1b2impspf.cpp.

Referenced by laplace_approximation_calculator::banded_calculations().

void check_pool_depths ( void  )

Description not yet available.

Parameters:

Definition at line 94 of file df1b2fnl.cpp.

dmatrix check_second_derivatives ( const init_df1b2vector &  x)

Description not yet available.

Parameters:

Definition at line 806 of file df1b2fn2.cpp.

void check_shape ( const df1b2vector &  _x,
const df1b2vector &  _y,
const char *  s 
)

Description not yet available.

Parameters:

Definition at line 30 of file f1b2vc5.cpp.

Referenced by df1b2vector::operator*=(), operator+(), df1b2vector::operator+=(), operator-(), df1b2vector::operator-=(), df1b2vector::operator/=(), and df1b2vector::operator=().

void check_shape ( const df1b2vector &  _x,
const dvector &  _y,
const char *  s 
)

Description not yet available.

Parameters:

Definition at line 15 of file f1b2vc5.cpp.

void check_shape ( const dvector &  _x,
const df1b2vector &  _y,
const char *  s 
)

Description not yet available.

Parameters:

Definition at line 45 of file f1b2vc5.cpp.

void check_shape ( const df1b2vector &  _x,
const df1b2matrix &  _y,
const char *  s 
)

Description not yet available.

Parameters:

Definition at line 60 of file f1b2vc5.cpp.

d3_array check_third_derivatives ( const init_df1b2vector &  x)

Description not yet available.

Parameters:

Definition at line 833 of file df1b2fn2.cpp.

void checkidentiferstring ( const char *  ids,
test_smartlist &  list 
)

Description not yet available.

Parameters:

Definition at line 250 of file df1b2fn5.cpp.

Referenced by read_pass1_1(), read_pass1_1_dv(), read_pass1_1x(), read_pass1_2(), read_pass1_2_dv(), read_pass1_2x(), read_pass1_3(), read_pass1_3_dv(), read_pass1_3x(), read_pass1_eq_1(), read_pass1_eq_2(), read_pass1_eq_3(), read_pass1_init_1(), read_pass1_init_2(), read_pass1_init_3(), read_pass1_minus_eq_1(), read_pass1_minus_eq_2(), read_pass1_minus_eq_3(), read_pass1_plus_eq_1(), read_pass1_plus_eq_2(), read_pass1_plus_eq_3(), read_pass2_1(), read_pass2_1_dvdv(), read_pass2_1_dvdvdv(), read_pass2_1_minus(), read_pass2_1_minuscv(), read_pass2_1_minusvc(), read_pass2_1_prod(), read_pass2_1_prod_vector(), read_pass2_1_prodc1(), read_pass2_1_prodc2(), read_pass2_1_sum(), read_pass2_1_sumc(), read_pass2_2(), read_pass2_2_dvdv(), read_pass2_2_dvdvdv(), read_pass2_2_minus(), read_pass2_2_minuscv(), read_pass2_2_minusvc(), read_pass2_2_prod(), read_pass2_2_prod_vector(), read_pass2_2_prodc1(), read_pass2_2_prodc2(), read_pass2_2_sum(), read_pass2_2_sumc(), read_pass2_3(), read_pass2_3_dvdv(), read_pass2_3_dvdvdv(), read_pass2_3_minus(), read_pass2_3_minuscv(), read_pass2_3_minusvc(), read_pass2_3_prod(), read_pass2_3_prod_vector(), read_pass2_3_prodc1(), read_pass2_3_prodc2(), read_pass2_3_sum(), read_pass2_3_sumc(), read_tilde_values_1(), read_tilde_values_2(), and read_tilde_values_3().

df1b2matrix choleski_decomp ( const df1b2matrix &  MM)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2mat.cpp.

df1b2matrix choleski_decomp_extra ( const df1b2matrix &  M)
df1b2vector colsum ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 38 of file f1b2vc6.cpp.

df1b2vector column ( const df1b2matrix &  _M,
int  n 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2ma1.cpp.

df1b2variable cos ( const df1b2variable &  _xx)

Description not yet available.

Parameters:

Definition at line 43 of file df1b2funx.cpp.

df1b2vector cos ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 179 of file f1b2vc1.cpp.

df1b2variable cube ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 850 of file df1b2fun.cpp.

df1b2vector cube ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 55 of file f1b2v11.cpp.

df1b2variable cumd_exponential ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 29 of file df1b2cum.cpp.

df1b2variable cumd_norm ( const df1b2variable &  _x)

Definition at line 776 of file df3fun.cpp.

void df1b2_gradcalc1 ( void  )

Description not yet available.

Parameters:

Definition at line 145 of file df1b2fun.cpp.

Referenced by laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded_adjoint(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_importance_sampling_adjoint(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_banded(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_x_u_block_diagonal(), laplace_approximation_calculator::get_block_diagonal_hessian(), laplace_approximation_calculator::get_complete_hessian(), get_newton_raphson_info(), laplace_approximation_calculator::get_newton_raphson_info(), and get_second_ders().

df1b2variable dflogistic ( double  a,
double  b,
const df1b2variable &  x 
)

Description not yet available.

Parameters:

Definition at line 53 of file dflogistic.cpp.

df1b2variable dfposfun ( const df1b2variable &  x,
const double  eps 
)

Description not yet available.

Parameters:

Definition at line 234 of file df1b2loc.cpp.

df1b2variable div ( const df1b2variable &  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 1293 of file df32fun.cpp.

Referenced by function_minimizer::get_particular_grad().

double do_gauss_hermite_block_diagonal ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2gh.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

double do_gauss_hermite_block_diagonal_multi ( const dvector &  x,
const dvector &  u0,
const dmatrix &  Hess,
const dvector &  _xadjoint,
const dvector &  _uadjoint,
const dmatrix &  _Hessadjoint,
function_minimizer *  pmin 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2ghmult.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

df1b2matrix elem_div ( const df1b2matrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 400 of file f1b2vc5.cpp.

df1b2matrix elem_div ( const dmatrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 424 of file f1b2vc5.cpp.

df1b2matrix elem_div ( const df1b2matrix &  _MM,
const dmatrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 448 of file f1b2vc5.cpp.

df1b2vector elem_div ( const df1b2vector &  _v,
const df1b2vector &  _w 
)

Description not yet available.

Parameters:

Definition at line 491 of file f1b2vc5.cpp.

df1b2vector elem_div ( const dvector &  _v,
const df1b2vector &  _w 
)

Description not yet available.

Parameters:

Definition at line 472 of file f1b2vc5.cpp.

df1b2vector elem_div ( const df1b2vector &  _v,
const dvector &  _w 
)

Description not yet available.

Parameters:

Definition at line 567 of file f1b2vc5.cpp.

df1b2matrix elem_prod ( const df1b2matrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 328 of file f1b2vc5.cpp.

df1b2matrix elem_prod ( const dmatrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 352 of file f1b2vc5.cpp.

df1b2matrix elem_prod ( const df1b2matrix &  _MM,
const dmatrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 376 of file f1b2vc5.cpp.

df1b2vector elem_prod ( const df1b2vector &  _v,
const df1b2vector &  _w 
)

Description not yet available.

Parameters:

Definition at line 510 of file f1b2vc5.cpp.

df1b2vector elem_prod ( const df1b2vector &  _v,
const dvector &  _w 
)

Description not yet available.

Parameters:

Definition at line 529 of file f1b2vc5.cpp.

df1b2vector elem_prod ( const dvector &  _v,
const df1b2vector &  _w 
)

Description not yet available.

Parameters:

Definition at line 548 of file f1b2vc5.cpp.

double evaluate_function ( const dvector &  x,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 1984 of file df1b2lap.cpp.

double evaluate_function ( double &  fval,
const dvector &  x,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 2018 of file df1b2lap.cpp.

double evaluate_function ( double &  fval,
const dvector &  x,
const dvector &  g,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 2054 of file df1b2lap.cpp.

double evaluate_function_no_derivatives ( const dvector &  x,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 2149 of file df1b2lap.cpp.

Referenced by laplace_approximation_calculator::local_minimization().

double evaluate_function_quiet ( const dvector &  x,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 2090 of file df1b2lap.cpp.

Referenced by laplace_approximation_calculator::default_calculations(), and laplace_approximation_calculator::default_calculations_check_derivatives().

dvector evaluate_function_with_quadprior ( const dvector &  x,
int  usize,
function_minimizer *  pfmin 
)

Description not yet available.

Parameters:

Definition at line 45 of file quadpri.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::default_calculations(), and laplace_approximation_calculator::default_calculations_check_derivatives().

df1b2variable exp ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 462 of file df1b2fun.cpp.

df1b2vector exp ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 84 of file f1b2vc1.cpp.

df1b2matrix exp ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc6.cpp.

df1b2variable fabs ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 413 of file df1b2fn3.cpp.

df1b2vector fabs ( const df1b2vector &  t1)

Description not yet available.

Parameters:

Definition at line 425 of file df1b2fn3.cpp.

df1b2variable factln ( const df1b2variable &  n)

Description not yet available.

Parameters:

Definition at line 137 of file df1b2f20.cpp.

df1b2vector first_difference ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2v11.cpp.

df1b2variable fourth ( const df1b2variable &  x)
df1b2variable gamma_density ( const df1b2variable &  _x,
double  r,
double  mu 
)

Description not yet available.

Parameters:

Definition at line 13 of file df1b2-separable/vgamdens.cpp.

df1b2variable gamma_density ( const df1b2variable &  _x,
const df1b2variable &  _r,
const df1b2variable &  _mu 
)

Description not yet available.

Parameters:

Definition at line 24 of file df1b2-separable/vgamdens.cpp.

df1b2variable gamma_deviate ( const df1b2variable &  _x,
const df1b2variable &  _a 
)

Description not yet available.

Parameters:

Definition at line 28 of file gammdev.cpp.

df1b2variable gammln ( const df1b2variable &  z)

Description not yet available.

Parameters:

Definition at line 78 of file df1b2f20.cpp.

df1b2vector gammln ( const df1b2vector &  z)

Description not yet available.

Parameters:

Definition at line 96 of file df1b2f20.cpp.

dmatrix get_hessian ( const init_df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 712 of file df1b2fn2.cpp.

df1b2variable inv ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 521 of file df1b2fun.cpp.

df1b2variable inv_cumd_beta_stable ( const df1b2variable &  a,
const df1b2variable &  b,
const df1b2variable &  x,
double  eps = 1.e-7 
)

Definition at line 47 of file df1b2invcumdbeta.cpp.

df1b2variable inv_cumd_cauchy ( const df1b2variable &  n)
df1b2variable inv_cumd_exponential ( const df1b2variable &  y)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2cum.cpp.

df1b2variable inv_cumd_gamma ( const df1b2variable &  _y,
const df1b2variable &  _a 
)

Description not yet available.

Parameters:

Definition at line 46 of file gammdev.cpp.

double inv_cumd_gamma ( double  y,
double  _a 
)

Definition at line 125 of file cgamdev.cpp.

df1b2variable inv_cumd_normal_logistic_mixture ( const df1b2variable &  _yy,
double  a 
)

Description not yet available.

Parameters:

Definition at line 93 of file df1b2normmix2.cpp.

df1b2variable inv_cumd_normal_mixture ( const df1b2variable &  _yy,
double  a 
)

Description not yet available.

Parameters:

Definition at line 68 of file df1b2normmix.cpp.

df1b2variable inv_cumd_t ( const df1b2variable &  n,
const df1b2variable &  u,
double  eps 
)

Description not yet available.

Parameters:

Definition at line 17 of file dfinvcumdt.cpp.

df1b2variable lgamma2 ( const df1b2variable &  _x)
df1b2variable ln_det ( const df1b2matrix &  m1)

Definition at line 324 of file f1b2lndt.cpp.

df1b2variable ln_det ( df1b2matrix &  M,
int &  sgn 
)
df1b2variable log ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 512 of file df1b2fun.cpp.

df1b2vector log ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 103 of file f1b2vc1.cpp.

df1b2matrix log ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 199 of file f1b2vc2.cpp.

df1b2variable log_comb ( const df1b2variable &  n,
double  k 
)

Description not yet available.

Parameters:

Definition at line 110 of file df1b2f20.cpp.

df1b2variable log_comb ( const df1b2variable &  n,
const df1b2variable &  k 
)

Description not yet available.

Parameters:

Definition at line 119 of file df1b2f20.cpp.

df1b2variable log_comb ( double  n,
const df1b2variable &  k 
)

Description not yet available.

Parameters:

Definition at line 128 of file df1b2f20.cpp.

df1b2variable log_der_logistic ( double  a,
double  b,
const df1b2variable &  x 
)

Description not yet available.

Parameters:

Definition at line 35 of file dflogistic.cpp.

df1b2variable log_gamma_density ( const df1b2variable &  _x,
double  r,
double  mu 
)

Description not yet available.

Parameters:

Definition at line 37 of file df1b2-separable/vgamdens.cpp.

df1b2variable log_gamma_density ( const df1b2variable &  _x,
const df1b2variable &  _r,
const df1b2variable &  _mu 
)

Description not yet available.

Parameters:

Definition at line 48 of file df1b2-separable/vgamdens.cpp.

df1b2variable log_negbinomial_density ( double  x,
const df1b2variable &  mu,
const df1b2variable &  tau 
)

Definition at line 15 of file df3gammp.cpp.

df1b2variable logistic ( double  a,
double  b,
const df1b2variable &  x 
)

Description not yet available.

Parameters:

Definition at line 17 of file dflogistic.cpp.

df1b2variable lower_triangular_ln_det ( const df1b2matrix &  m)

Description not yet available.

Parameters:

Definition at line 76 of file f1b2v12.cpp.

df1b2variable lower_triangular_ln_det ( const df1b2matrix &  m,
int &  sgn 
)

Description not yet available.

Parameters:

Definition at line 86 of file f1b2v12.cpp.

df1b2vector lower_triangular_solve ( const df1b2matrix &  m,
const df1b2vector &  v 
)

Description not yet available.

Parameters:

Definition at line 48 of file f1b2v12.cpp.

df1b2vector lower_triangular_solve_trans ( const df1b2matrix &  M,
const df1b2vector &  y 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2v12.cpp.

df1b2variable max ( const df1b2vector &  t1)

Description not yet available.

Parameters:

Definition at line 440 of file df1b2fn3.cpp.

df1b2variable mean ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 832 of file f1b2vc5.cpp.

df1b2variable mean ( const df1b2matrix &  _x)

Description not yet available.

Parameters:

Definition at line 943 of file f1b2vc5.cpp.

void memcpy ( test_smartlist &  ,
void *  ,
const size_t  nsize 
)

memcpy for test_smartlist

Definition at line 371 of file df1b2f10.cpp.

Referenced by byte_copy(), df3_three_variable::df3_three_variable(), dv_assign(), dvdv_add(), DF_FILE::fread(), funnel_gradcalc(), DF_FILE::fwrite(), memcpy(), dvector::operator=(), dvar_vector::operator=(), read_pass1_1(), read_pass1_1_dv(), read_pass1_1x(), read_pass1_2(), read_pass1_2_dv(), read_pass1_2x(), read_pass1_3(), read_pass1_3_dv(), read_pass1_3x(), read_pass1_eq_1(), read_pass1_init_1(), read_pass2_1(), read_pass2_1_dvdv(), read_pass2_1_dvdvdv(), read_pass2_1_prod(), read_pass2_1_prod_vector(), read_pass2_1_prodc1(), read_pass2_1_prodc2(), read_pass2_2(), read_pass2_2_dvdv(), read_pass2_2_dvdvdv(), read_pass2_2_prod(), read_pass2_2_prod_vector(), read_pass2_2_prodc1(), read_pass2_2_prodc2(), read_pass2_3(), read_pass2_3_dvdv(), read_pass2_3_dvdvdv(), read_pass2_3_prod(), read_pass2_3_prod_vector(), read_pass2_3_prodc1(), read_pass2_3_prodc2(), read_tilde_values_2(), read_tilde_values_3(), gradient_structure::restore_arrays(), gradient_structure::save_arrays(), df1b2_gradlist::write_pass1(), df1b2_gradlist::write_pass1_eq(), df1b2_gradlist::write_pass1_initialize(), df1b2_gradlist::write_pass1_minus(), df1b2_gradlist::write_pass1_minuscv(), df1b2_gradlist::write_pass1_minuseq(), df1b2_gradlist::write_pass1_minusvc(), df1b2_gradlist::write_pass1_pluseq(), df1b2_gradlist::write_pass1_prod(), df1b2_gradlist::write_pass1_sum(), df1b2_gradlist::write_pass1x(), and df1b2_gradlist::write_save_pass2_tilde_values().

void memcpy ( void *  ,
test_smartlist &  ,
const size_t  nsize 
)

memcpy for test_smartlist

Definition at line 385 of file df1b2f10.cpp.

df1b2variable mfexp ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 471 of file df1b2fun.cpp.

df1b2variable mfexp ( const df1b2variable &  x,
double  b 
)

Description not yet available.

Parameters:

Definition at line 492 of file df1b2fun.cpp.

df1b2vector mfexp ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 41 of file f1b2vc3.cpp.

df1b2matrix mfexp ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 175 of file f1b2vc2.cpp.

df1b2variable mult_add ( const df1b2variable &  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 749 of file df1b2fun.cpp.

df1b2variable mypow ( const df1b2variable &  x,
double  y 
)

Description not yet available.

Parameters:

Definition at line 1332 of file df32fun.cpp.

void ncount_checker ( int  ncount,
int  ncount_check 
)
df1b2variable norm ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 870 of file f1b2vc5.cpp.

df1b2variable norm ( const df1b2matrix &  _x)

Description not yet available.

Parameters:

Definition at line 907 of file f1b2vc5.cpp.

df1b2variable norm2 ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 851 of file f1b2vc5.cpp.

df1b2variable norm2 ( const df1b2matrix &  _x)

Description not yet available.

Parameters:

Definition at line 888 of file f1b2vc5.cpp.

df1b2variable norm_to_gamma ( const df1b2variable &  v,
const df1b2variable &  alpha,
double  bound 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2normgam.cpp.

df1b2variable operator* ( const df1b2variable &  _x,
double  y 
)

Description not yet available.

Parameters:

Definition at line 22 of file df1b2prb.cpp.

df1b2variable operator* ( const df1b2variable &  _x,
const df1b2variable &  _y 
)

Description not yet available.

Parameters:

Definition at line 21 of file df1b2prd.cpp.

df1b2variable operator* ( double  x,
const df1b2variable &  _y 
)

Description not yet available.

Parameters:

Definition at line 37 of file df1b2prc.cpp.

df1b2vector operator* ( double  v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 302 of file f1b2vc3.cpp.

df1b2vector operator* ( const df1b2vector &  _v,
double  x 
)

Description not yet available.

Parameters:

Definition at line 320 of file f1b2vc3.cpp.

df1b2variable operator* ( const df1b2vector &  _v,
const dvector &  _x 
)

Description not yet available.

Parameters:

Definition at line 242 of file f1b2vc3.cpp.

df1b2variable operator* ( const dvector &  _v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 224 of file f1b2vc3.cpp.

df1b2vector operator* ( const df1b2vector &  _x,
const df1b2variable &  _v 
)

Description not yet available.

Parameters:

Definition at line 78 of file f1b2vc3.cpp.

df1b2vector operator* ( const df1b2variable &  _v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 97 of file f1b2vc3.cpp.

df1b2matrix operator* ( const df1b2matrix &  _M,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 261 of file f1b2vc4.cpp.

df1b2matrix operator* ( const dmatrix &  _M,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 283 of file f1b2vc4.cpp.

df1b2vector operator* ( const dmatrix &  _M,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 139 of file f1b2vc5.cpp.

df1b2matrix operator* ( const df1b2variable &  _x,
const dmatrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 239 of file f1b2vc4.cpp.

df1b2matrix operator* ( const df1b2matrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 273 of file f1b2vc5.cpp.

df1b2matrix operator* ( const dmatrix &  M,
const df1b2matrix &  x 
)
df1b2matrix operator* ( const df1b2variable &  _x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 217 of file f1b2vc4.cpp.

df1b2matrix operator* ( const df1b2matrix &  _M,
const double  x 
)

Description not yet available.

Parameters:

Definition at line 305 of file f1b2vc4.cpp.

df1b2matrix operator* ( const double  x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 314 of file f1b2vc4.cpp.

df1b2vector operator* ( const df1b2variable &  _v,
const dvector &  _x 
)

Description not yet available.

Parameters:

Definition at line 59 of file f1b2vc3.cpp.

df1b2vector operator* ( const dvector &  _v,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 119 of file f1b2vc8.cpp.

df1b2vector operator* ( const dvector &  _x,
const df1b2matrix &  _M 
)

Vector and Matrix Multiplication.

Parameters:
_xis a vector with dimensions (m_min, m_max).
_Mis a matrix with dimensions (m_min, m_max, n_min, n_max).
Returns:
vector result of _x * _M with dimensions (n_min, n_max)

Definition at line 245 of file f1b2vc5.cpp.

df1b2vector operator* ( const df1b2vector &  _x,
const df1b2matrix &  _M 
)

Vector and Matrix Multiplication.

Parameters:
_xis a vector with dimensions (m_min, m_max).
_Mis a matrix with dimensions (m_min, m_max, n_min, n_max).
Returns:
vector result of _x * _M with dimensions (n_min, n_max)

Definition at line 185 of file f1b2vc5.cpp.

df1b2vector operator* ( const df1b2vector &  _x,
const dmatrix &  _M 
)

Vector and Matrix Multiplication.

Parameters:
_xis a vector with dimensions (m_min, m_max).
_Mis a matrix with dimensions (m_min, m_max, n_min, n_max).
Returns:
vector result of _x * _M with dimensions (n_min, n_max)

Definition at line 215 of file f1b2vc5.cpp.

df1b2variable operator* ( const df1b2vector &  _x,
const df1b2vector &  _y 
)

Description not yet available.

Parameters:

Definition at line 178 of file f1b2v10.cpp.

df1b2vector operator* ( const df1b2matrix &  _M,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 161 of file f1b2vc5.cpp.

df1b2vector operator* ( const df1b2matrix &  _M,
const dvector &  _x 
)

Description not yet available.

Parameters:

Definition at line 308 of file f1b2vc5.cpp.

df1b2variable operator+ ( const df1b2variable &  _x,
const df1b2variable &  _y 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2sum.cpp.

df1b2variable operator+ ( double  x,
const df1b2variable &  _y 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2sumc.cpp.

df1b2variable operator+ ( const df1b2variable &  x,
double  y 
) [inline]

Description not yet available.

Parameters:

Definition at line 889 of file df1b2fun.h.

df1b2matrix operator+ ( const df1b2matrix &  _M,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc4.cpp.

df1b2matrix operator+ ( const df1b2matrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 378 of file f1b2vc4.cpp.

df1b2matrix operator+ ( const df1b2matrix &  _M,
const dmatrix &  N 
)

Description not yet available.

Parameters:

Definition at line 402 of file f1b2vc4.cpp.

df1b2matrix operator+ ( const dmatrix &  M,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 425 of file f1b2vc4.cpp.

df1b2matrix operator+ ( const df1b2variable &  _x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 174 of file f1b2vc4.cpp.

df1b2vector operator+ ( const df1b2variable &  _x,
const dvector &  _v 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc8.cpp.

df1b2matrix operator+ ( const df1b2matrix &  _M,
const double  x 
)

Description not yet available.

Parameters:

Definition at line 153 of file f1b2vc4.cpp.

df1b2matrix operator+ ( const double  x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 196 of file f1b2vc4.cpp.

df1b2vector operator+ ( const df1b2variable &  _v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 135 of file f1b2vc3.cpp.

df1b2vector operator+ ( double  v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 154 of file f1b2vc3.cpp.

df1b2vector operator+ ( const df1b2vector &  _x,
const df1b2vector &  _y 
)

Description not yet available.

Parameters:

Definition at line 18 of file f1b2vc1.cpp.

df1b2vector operator+ ( const df1b2vector &  _x,
const df1b2variable &  _v 
)

Description not yet available.

Parameters:

Definition at line 116 of file f1b2vc3.cpp.

df1b2vector operator+ ( const dvector &  _x,
const df1b2vector &  _y 
)

Description not yet available.

Parameters:

Definition at line 62 of file f1b2vc1.cpp.

df1b2vector operator+ ( const df1b2vector &  _x,
const dvector &  _y 
)

Description not yet available.

Parameters:

Definition at line 40 of file f1b2vc1.cpp.

df1b2vector operator+ ( const dvector &  _v,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 102 of file f1b2vc8.cpp.

df1b2variable operator- ( const df1b2variable &  _x,
const df1b2variable &  _y 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2min.cpp.

df1b2variable operator- ( double  x,
const df1b2variable &  y 
)

Definition at line 13 of file df1b2min2.cpp.

df1b2variable operator- ( const df1b2variable &  x,
double  y 
)

Definition at line 13 of file df1b2min3.cpp.

df1b2matrix operator- ( const df1b2matrix &  _M,
const dmatrix &  N 
)

Description not yet available.

Parameters:

Definition at line 472 of file f1b2vc4.cpp.

df1b2matrix operator- ( const df1b2matrix &  M,
const double  x 
)
df1b2matrix operator- ( const df1b2matrix &  M,
const df1b2variable &  x 
)
df1b2matrix operator- ( const df1b2matrix &  _MM,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 448 of file f1b2vc4.cpp.

df1b2matrix operator- ( const dmatrix &  M,
const df1b2matrix &  _NN 
)

Description not yet available.

Parameters:

Definition at line 495 of file f1b2vc4.cpp.

df1b2matrix operator- ( const df1b2variable &  _x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 335 of file f1b2vc4.cpp.

df1b2matrix operator- ( const double  x,
const df1b2matrix &  _M 
)

Description not yet available.

Parameters:

Definition at line 357 of file f1b2vc4.cpp.

df1b2vector operator- ( const df1b2vector &  _x,
const df1b2vector &  _y 
)

Description not yet available.

Parameters:

Definition at line 198 of file f1b2vc1.cpp.

df1b2vector operator- ( const dvector &  _x,
const df1b2vector &  _y 
)

Description not yet available.

Parameters:

Definition at line 242 of file f1b2vc1.cpp.

df1b2vector operator- ( const df1b2variable &  _x,
const df1b2vector &  _v 
)

Description not yet available.

Parameters:

Definition at line 51 of file f1b2vc8.cpp.

df1b2vector operator- ( const df1b2variable &  _x,
const dvector &  _v 
)

Description not yet available.

Parameters:

Definition at line 68 of file f1b2vc8.cpp.

df1b2vector operator- ( const df1b2vector &  _v,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 34 of file f1b2vc8.cpp.

df1b2vector operator- ( const df1b2vector &  _x,
const dvector &  _y 
)

Description not yet available.

Parameters:

Definition at line 220 of file f1b2vc1.cpp.

df1b2vector operator- ( const dvector &  _v,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 85 of file f1b2vc8.cpp.

df1b2variable operator- ( const df1b2variable &  x) [inline]

Description not yet available.

Parameters:

Definition at line 1685 of file df1b2fun.h.

df1b2vector operator- ( const df1b2vector &  x) [inline]

Description not yet available.

Parameters:

Definition at line 1694 of file df1b2fun.h.

df1b2variable operator/ ( const df1b2variable &  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 94 of file df1b2f28.cpp.

df1b2variable operator/ ( const df1b2variable &  x,
double  y 
)

Description not yet available.

Parameters:

Definition at line 28 of file df1b2prc.cpp.

df1b2variable operator/ ( double  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 136 of file df1b2f28.cpp.

df1b2vector operator/ ( const df1b2variable &  x,
const df1b2vector &  _v 
)

Description not yet available.

Parameters:

Definition at line 33 of file f1b2vc9.cpp.

df1b2vector operator/ ( const double &  x,
const df1b2vector &  _v 
)

Description not yet available.

Parameters:

Definition at line 97 of file f1b2vc9.cpp.

df1b2vector operator/ ( const df1b2vector &  _v,
const df1b2variable &  x 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc9.cpp.

df1b2vector operator/ ( const df1b2vector &  _v,
double  x 
)

Description not yet available.

Parameters:

Definition at line 81 of file f1b2vc9.cpp.

df1b2vector operator/ ( const dvector &  v,
const df1b2variable &  x 
)

Description not yet available.

Parameters:

Definition at line 66 of file f1b2vc9.cpp.

ostream& operator<< ( const ostream &  _os,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2f16.cpp.

ostream& operator<< ( const ostream &  _os,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 34 of file df1b2f16.cpp.

ostream& operator<< ( const ostream &  _os,
const df1b2matrix &  _x 
)

Description not yet available.

Parameters:

Definition at line 51 of file df1b2f16.cpp.

ostream& operator<< ( const ostream &  _os,
const df1b2_init_number_vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 69 of file df1b2f16.cpp.

ostream& operator<< ( const ostream &  _os,
const init_df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 104 of file df1b2f16.cpp.

ostream& operator<< ( const ostream &  _os,
const df1b2_init_bounded_number_vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 86 of file df1b2f16.cpp.

ofstream& operator<< ( const ofstream &  _s,
const nested_calls_shape &  m 
)
df1b2matrix outer_prod ( const df1b2vector &  _MM,
const df1b2vector &  _NN 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc3.cpp.

df1b2variable posfun ( const df1b2variable &  x,
const double  eps 
)

Description not yet available.

Parameters:

Definition at line 252 of file df1b2loc.cpp.

df1b2variable posfun ( const df1b2variable &  x,
const double  eps,
const df1b2variable &  _pen 
)

Description not yet available.

Parameters:

Definition at line 215 of file df1b2loc.cpp.

df1b2vector posfun ( const df1b2vector &  x,
double  eps,
const df1b2variable &  _pen 
)

Description not yet available.

Parameters:

Definition at line 198 of file df1b2loc.cpp.

df1b2variable posfun2 ( const df1b2variable &  x,
const double  eps,
const df1b2variable &  _pen 
)

Description not yet available.

Parameters:

Definition at line 268 of file df1b2loc.cpp.

df1b2variable pow ( const df1b2variable &  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2f28.cpp.

df1b2variable pow ( const df1b2variable &  x,
double  y 
)

Description not yet available.

Parameters:

Definition at line 172 of file df1b2f28.cpp.

df1b2variable pow ( double  x,
const df1b2variable &  y 
)

Description not yet available.

Parameters:

Definition at line 63 of file df1b2f28.cpp.

df1b2vector pow ( const df1b2vector &  _v,
double  x 
)

Description not yet available.

Parameters:

Definition at line 22 of file f1b2v10.cpp.

df1b2vector pow ( const df1b2vector &  _v,
const df1b2variable &  _x 
)

Description not yet available.

Parameters:

Definition at line 56 of file f1b2v10.cpp.

df1b2vector pow ( const df1b2vector &  _x,
const df1b2vector &  _v 
)

Description not yet available.

Parameters:

Definition at line 38 of file f1b2v10.cpp.

df1b2vector pow ( const df1b2variable &  _v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 75 of file f1b2v10.cpp.

df1b2vector pow ( df1b2vector const &  _x,
dvector const &  v 
)

raise x to the power v.

Parameters:
xvector of bases
vvector of exponents

Definition at line 163 of file f1b2v10.cpp.

df1b2vector pow ( const double  v,
const df1b2vector &  _x 
)

Description not yet available.

Parameters:

Definition at line 94 of file f1b2v10.cpp.

df1b2vector pow ( const dvector &  x,
const df1b2vector &  a 
)

raise x to the power a.

Parameters:
xvector of bases
avector of exponents

Definition at line 129 of file f1b2v10.cpp.

df1b2vector pow ( const dvector &  x,
const df1b2variable &  a 
)

raise x to the power a.

Parameters:
xvector of bases
athe exponent

Definition at line 112 of file f1b2v10.cpp.

void print_derivatives ( const adstring &  s,
double  f,
double  df,
double  d2f,
double  d3f,
int  bflag 
)

Description not yet available.

Parameters:

Definition at line 27 of file df1b2fn3.cpp.

Referenced by read_pass1_1(), read_pass1_1_dv(), read_pass1_1x(), read_pass1_2(), read_pass1_2_dv(), read_pass1_2x(), read_pass1_3(), read_pass1_3_dv(), read_pass1_3x(), read_pass1_eq_1(), read_pass1_eq_2(), read_pass1_eq_3(), read_pass1_minus_eq_1(), read_pass1_minus_eq_2(), read_pass1_minus_eq_3(), read_pass1_plus_eq_1(), read_pass1_plus_eq_2(), read_pass1_plus_eq_3(), read_pass2_1(), read_pass2_1_dvdv(), read_pass2_1_dvdvdv(), read_pass2_2(), read_pass2_2_dvdv(), read_pass2_2_dvdvdv(), read_pass2_3(), read_pass2_3_dvdv(), and read_pass2_3_dvdvdv().

void print_derivatives ( const adstring &  s,
double  f,
double  df1,
double  df2,
double  df11,
double  df12,
double  df22,
double  df111,
double  df112,
double  df122,
double  df222,
int  bflag 
)

Description not yet available.

Parameters:

Definition at line 44 of file df1b2fn3.cpp.

void print_derivatives ( df1b2_header *  px,
const char *  s,
int  bflag 
)

Description not yet available.

Parameters:

Definition at line 70 of file df1b2fn3.cpp.

void print_dot_derivatives ( df1b2_header *  px,
const char *  s 
)
void print_is_diagnostics ( laplace_approximation_calculator *  lapprox)

Definition at line 831 of file xmodelm3.cpp.

Referenced by function_minimizer::minimize().

void read ( const test_smartlist &  ,
void *  ,
int  nsize 
)

Referenced by uistream::operator>>(), test_smartlist::read_buffer(), fixed_smartlist::read_buffer(), fixed_smartlist2::read_buffer(), DF_FILE::read_cmpdif_stack_buffer(), fixed_smartlist::read_file(), fixed_smartlist2::read_file(), grad_stack::read_grad_stack_buffer(), dfsdmat::restore(), gradient_structure::restore_arrays(), test_smartlist::rewind(), fixed_smartlist::rewind(), and fixed_smartlist2::rewind().

void read_pass1_1 ( void  )

Description not yet available.

Parameters:

Definition at line 107 of file df1b2f11.cpp.

Referenced by ad_read_pass1().

void read_pass1_2 ( void  )

Description not yet available.

Parameters:

Definition at line 225 of file df1b2f11.cpp.

Referenced by ad_read_pass1().

df1b2variable robust_normal_logistic_mixture_deviate ( const df1b2variable &  x,
double  spread 
)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2norlogmix.cpp.

df1b2variable robust_normal_mixture_deviate ( const df1b2variable &  x,
double  spread 
)

Description not yet available.

Parameters:

Definition at line 30 of file df1b2norlogmix.cpp.

df1b2vector rowsum ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 59 of file f1b2vc6.cpp.

void set_dependent_variable ( const df1b2variable &  _x)

Description not yet available.

Parameters:

Definition at line 698 of file df1b2fn2.cpp.

Referenced by laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded_adjoint(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_importance_sampling_adjoint(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_banded(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_x_u_block_diagonal(), laplace_approximation_calculator::get_block_diagonal_hessian(), laplace_approximation_calculator::get_complete_hessian(), get_newton_raphson_info(), laplace_approximation_calculator::get_newton_raphson_info(), and get_second_ders().

void set_value ( const df1b2variable &  _u,
const init_df1b2vector &  _x,
const int &  _ii,
double  fmin,
double  fmax,
const df1b2variable &  _fpen 
)

Description not yet available.

Parameters:

Definition at line 354 of file df1b2f15.cpp.

void set_value ( const df1b2variable &  u,
const init_df1b2vector &  x,
const int &  _ii,
double  fmin,
double  fmax,
const df1b2variable &  fpen,
double  s 
)

Definition at line 382 of file df1b2f15.cpp.

df1b2variable sfabs ( const df1b2variable &  x)
df1b2variable sin ( const df1b2variable &  _xx)

Description not yet available.

Parameters:

Definition at line 17 of file df1b2funx.cpp.

df1b2vector sin ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 122 of file f1b2vc1.cpp.

int size_count ( const df1b2matrix &  _x)

Description not yet available.

Parameters:

Definition at line 270 of file f1b2vc3.cpp.

int size_count ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 260 of file f1b2vc3.cpp.

df1b2vector solve ( const df1b2matrix &  x,
const dvector &   
)

Definition at line 36 of file f1b2solv.cpp.

df1b2vector solve ( const df1b2matrix &  x,
const df1b2vector &   
)

Definition at line 42 of file f1b2sol2.cpp.

dvar_vector solve ( const named_dvar_matrix &  M,
const random_effects_vector &  v 
)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2sol3.cpp.

df1b2vector solve ( df1b2matrix &  M,
df1b2vector &  v,
const df1b2variable &  ln_det 
)

Definition at line 385 of file f1b2lndt.cpp.

df1b2vector solve ( df1b2matrix &  M,
df1b2vector &  v,
const df1b2variable &  ln_det,
const int &  sgn 
)

Definition at line 407 of file f1b2lndt.cpp.

df1b2matrix solve ( const df1b2matrix &  aa,
const df1b2matrix &  tz,
df1b2variable  ln_unsigned_det,
df1b2variable &  sign 
)

Description not yet available.

Parameters:
\n\nThe implementation of this algorithm was inspired by "Numerical Recipes in C", 2nd edition, Press, Teukolsky, Vetterling, Flannery, chapter xx

Definition at line 33 of file df1b2-separable/expm.cpp.

df1b2matrix solve ( const df1b2matrix &  aa,
const df1b2matrix &  tz 
)

Description not yet available.

Parameters:

Definition at line 19 of file df1b2-separable/expm.cpp.

df1b2vector solve ( const df1b2matrix &  aa,
const df1b2vector &  z,
const df1b2variable &  ld,
df1b2variable &  sign 
)

Definition at line 27 of file f1b2sol2.cpp.

df1b2variable sqrt ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 37 of file df1b2f19.cpp.

df1b2vector sqrt ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 160 of file f1b2vc1.cpp.

df1b2variable square ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 838 of file df1b2fun.cpp.

df1b2matrix square ( const df1b2matrix &  _M)

Description not yet available.

Parameters:

Definition at line 131 of file f1b2vc2.cpp.

df1b2vector square ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 36 of file f1b2v11.cpp.

df1b2variable sum ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 814 of file f1b2vc5.cpp.

df1b2variable sum ( const df1b2matrix &  _x)

Description not yet available.

Parameters:

Definition at line 925 of file f1b2vc5.cpp.

df1b2variable sumsq ( const df1b2vector &  x)

Definition at line 864 of file f1b2vc5.cpp.

df1b2variable sumsq ( const df1b2matrix &  x)

Definition at line 901 of file f1b2vc5.cpp.

df1b2variable tan ( const df1b2variable &  x)

Description not yet available.

Parameters:

Definition at line 425 of file df1b2fun.cpp.

df1b2vector tan ( const df1b2vector &  _x)

Description not yet available.

Parameters:

Definition at line 141 of file f1b2vc1.cpp.

df1b2matrix trans ( const df1b2matrix &  _m1)

Description not yet available.

Parameters:

Definition at line 41 of file f1b2ma1.cpp.

double& value ( const df1b2variable &  _x)

Description not yet available.

Parameters:

Definition at line 480 of file df1b2fn2.cpp.

dvector value ( const df1b2vector &  _t1)

Description not yet available.

Parameters:

Definition at line 17 of file f1b2vc2.cpp.

dmatrix value ( const df1b2matrix &  _m)

Description not yet available.

Parameters:

Definition at line 33 of file f1b2vc2.cpp.

int withinbound ( int  lb,
int  n,
int  ub 
)

Definition at line 54 of file model.cpp.

void write ( const test_smartlist &  ,
void *  ,
int  nsize 
)

Referenced by dfsdmat::save(), gradient_structure::save_arrays(), DF_FILE::write_cmpdif_stack_buffer(), and grad_stack::write_grad_stack_buffer().

Variable Documentation

char AD_allocation_error_message[]

Definition at line 32 of file df1b2fn2.cpp.

df1b2_gradlist* f1b2gradlist

Definition at line 49 of file df1b2glo.cpp.

Referenced by df1b2variable::allocate(), funnel_init_var::allocate_all(), asin(), laplace_approximation_calculator::check_pool_size(), check_second_derivatives(), check_third_derivatives(), cos(), df1b2variable::deallocate(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), df1b2_gradcalc1(), df1b2variable::df1b2variable(), div(), laplace_approximation_calculator::do_separable_stuff(), laplace_approximation_calculator::do_separable_stuff_hessian_type_information(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_banded_adjoint(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_laplace_approximation_importance_sampling_adjoint(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_banded(), laplace_approximation_calculator::do_separable_stuff_newton_raphson_block_diagonal(), laplace_approximation_calculator::do_separable_stuff_x_u_block_diagonal(), gammlnguts(), laplace_approximation_calculator::get_block_diagonal_hessian(), laplace_approximation_calculator::get_complete_hessian(), laplace_approximation_calculator::get_newton_raphson_info(), inv_cumd_beta_stable(), inv_cumd_gamma(), inv_cumd_normal_logistic_mixture(), inv_cumd_normal_mixture(), laplace_approximation_calculator::laplace_approximation_calculator(), mypow(), df1b2function1::operator()(), df1b2function2::operator()(), operator*(), operator+(), df1b2variable::operator+=(), operator-(), df1b2variable::operator-=(), operator/(), df1b2variable::operator=(), pow(), read_pass1_1(), read_pass1_1_dv(), read_pass1_1x(), read_pass1_2(), read_pass1_2_dv(), read_pass1_2x(), read_pass1_3(), read_pass1_3_dv(), read_pass1_3x(), read_pass1_eq_1(), read_pass1_eq_2(), read_pass1_eq_3(), read_pass1_init_1(), read_pass1_init_2(), read_pass1_init_3(), read_pass1_minus_eq_1(), read_pass1_minus_eq_2(), read_pass1_minus_eq_3(), read_pass1_plus_eq_1(), read_pass1_plus_eq_2(), read_pass1_plus_eq_3(), read_pass2_1(), read_pass2_1_dvdv(), read_pass2_1_dvdvdv(), read_pass2_1_minus(), read_pass2_1_minuscv(), read_pass2_1_minusvc(), read_pass2_1_prod(), read_pass2_1_prod_vector(), read_pass2_1_prodc1(), read_pass2_1_prodc2(), read_pass2_1_sum(), read_pass2_1_sumc(), read_pass2_2(), read_pass2_2_dvdv(), read_pass2_2_dvdvdv(), read_pass2_2_minus(), read_pass2_2_minuscv(), read_pass2_2_minusvc(), read_pass2_2_prod(), read_pass2_2_prod_vector(), read_pass2_2_prodc1(), read_pass2_2_prodc2(), read_pass2_2_sum(), read_pass2_2_sumc(), read_pass2_3(), read_pass2_3_dvdv(), read_pass2_3_dvdvdv(), read_pass2_3_minus(), read_pass2_3_minuscv(), read_pass2_3_minusvc(), read_pass2_3_prod(), read_pass2_3_prod_vector(), read_pass2_3_prodc1(), read_pass2_3_prodc2(), read_pass2_3_sum(), read_pass2_3_sumc(), read_tilde_values_1(), read_tilde_values_2(), read_tilde_values_3(), sin(), laplace_approximation_calculator::test_trust_region_method(), df1b2_gradlist::write_pass1_minuseq(), df1b2_gradlist::write_pass1_pluseq(), and laplace_approximation_calculator::~laplace_approximation_calculator().

df1b2_gradlist** f1b2gradlist_stack
df1b2_gradlist* globalf1b2gradlist

Definition at line 51 of file df1b2glo.cpp.

df1b2_gradlist* localf1b2gradlist

Definition at line 50 of file df1b2glo.cpp.

int make_sure_df1b2fun_gets_linked
int max_num_init_df1b2variable

Definition at line 30 of file df1b2fn2.cpp.

Referenced by init_df1b2vector::allocate().

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