Here is a list of all class members with links to the classes they belong to:

- s -

• s : adstring
• saddlepointflag : laplace_approximation_calculator
• safe_allocate() : ivector , dvector
• safe_choleski_solver() : safe_choleski_solver
• safe_deallocate() : dvector , ivector
• save() : dfsdmat , initial_params
• save_adpool_pointer() : df1b2variable
• save_all() : initial_params
• save_arrays() : gradient_structure
• save_d3_array_position() : d3_array
• save_d3_array_value() : d3_array
• save_dependent_variable_position() : gradient_structure
• save_dmatrix_derivatives() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix
• save_dmatrix_derivatives_na() : dmatrix
• save_dmatrix_position() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix
• save_dmatrix_value() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix
• save_dvar_matrix_position() : dvar_matrix , banded_symmetric_dvar_matrix , banded_lower_triangular_dvar_matrix
• save_dvar_matrix_value() : banded_lower_triangular_dvar_matrix , dvar_matrix , banded_symmetric_dvar_matrix
• save_dvar_vector_position() : dvar_vector
• save_dvar_vector_value() : dvar_vector
• save_dvector_derivatives() : dvector
• save_dvector_derivatives_na() : dvector
• save_dvector_position() : dvector
• save_dvector_value() : dvector
• save_end() : test_smartlist , fixed_smartlist , fixed_smartlist2
• save_imatrix_position() : imatrix
• save_imatrix_value() : imatrix
• save_ivector_position() : ivector
• save_ivector_value() : ivector
• save_lmatrix_position() : lmatrix
• save_lmatrix_value() : lmatrix
• save_prevariable_position() : prevariable
• save_prevariable_value() : prevariable
• save_value() : param_init_matrix , param_init_d3array , initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_matrix
• save_var_file_flag : gradient_structure
• save_var_flag : gradient_structure
• save_variables() : dlist , gradient_structure
• save_varsptr() : initial_df1b2params
• saveposition() : smartlist , test_smartlist , fixed_smartlist , fixed_smartlist2
• sbptr : smartlist , test_smartlist , fixed_smartlist , fixed_smartlist2
• scale : fmmq , laplace_approximation_calculator
• scalefactor : initial_params , initial_df1b2params
• screenheight : text_info
• screenwidth : text_info
• scroll_flag : fmm_control , fmmc , function_minimizer
• sd : param_stddev_vector , param_stddev_number , param_stddev_matrix
• sd_flag : function_minimizer
• sd_phase : initial_params
• sd_routine() : function_minimizer
• sd_scale() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number , df1b2_init_bounded_number , df1b2_init_bounded_vector , df1b2_init_bounded_matrix
• sd_vscale() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array
• sdmatrix : dvector , mat_shape , mat_shapex , sdmatrix
• second_difference : dvector , dvar_vector
• send_all_to_slaves() : pvm_params
• send_to_slaves() : pvm_params , pvm_number , pvm_int
• separable_calculation_type : initial_df1b2params
• separable_call_level : laplace_approximation_calculator
• separable_calls_counter : laplace_approximation_calculator
• separable_flag : initial_df1b2params
• separable_function_difference : laplace_approximation_calculator
• set_active_flag() : initial_params
• set_active_only_random_effects() : initial_params
• set_active_random_effects() : initial_params
• set_activeflags() : shareinfo
• set_all_simulation_bounds() : initial_params
• set_ARRAY_MEMBLOCK_SIZE() : gradient_structure
• set_backword() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_blocksize() : df1b2variable
• set_bmap() : shareinfo
• set_CMPDIF_BUFFER_SIZE() : gradient_structure
• set_default_hessian_type() : laplace_approximation_calculator
• set_defaults() : fmm_control
• set_dependent_variables() : stddev_params , param_stddev_vector , param_stddev_number , param_stddev_matrix
• set_eof_bit() : cifstream
• set_forward() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_gbuffer_pointers() : grad_stack
• set_gradient_stack() : grad_stack
• set_gradient_stack0() : grad_stack
• set_gradient_stack1() : grad_stack
• set_gradient_stack2() : grad_stack
• set_gradient_stack4() : grad_stack
• set_GRADSTACK_BUFFER_BYTES() : gradient_structure
• set_GRADSTACK_BUFFER_SIZE() : gradient_structure
• set_ignore_eof() : cifstream
• set_inactive_flag() : initial_params
• set_inactive_only_random_effects() : initial_params
• set_inactive_random_effects() : initial_params
• set_index() : funnel_init_var , funnel_init_df1b2variable , funnel_init_bounded_df1b2vector , funnel_init_df1b2vector , funnel_init_df1b2matrix , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number
• set_initial_simplex() : function_minimizer
• set_initial_value() : initial_params , param_init_vector_vector , param_init_bounded_vector_vector , param_init_matrix_vector , param_init_bounded_matrix_vector , param_init_number_vector , param_init_bounded_number_vector
• set_invflags() : shareinfo
• set_MAX_DLINKS() : gradient_structure
• set_MAX_NVAR_OFFSET() : gradient_structure
• set_maxb() : param_init_bounded_vector , param_init_bounded_number , param_init_bounded_matrix
• set_maxder() : df1b2variable
• set_minb() : param_init_bounded_vector , param_init_bounded_number , param_init_bounded_matrix
• set_minder() : df1b2variable
• set_multinomial_weights() : function_minimizer
• set_no_derivatives() : df1b2_gradlist
• set_NO_SAVE_VARIABLES_VALUES() : gradient_structure
• set_noreadflag() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_NUM_DEPENDENT_VARIABLES() : gradient_structure
• set_NUM_RETURN_ARRAYS() : gradient_structure
• set_nvar() : df1b2variable
• set_old_style_flag() : style_flag_class , normal_quadratic_prior , normal_df1b2quadratic_prior , quadratic_re_penalty , df1b2quadratic_re_penalty , constant_quadratic_re_penalty , constant_df1b2quadratic_re_penalty
• set_only_random_effects_active() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_only_random_effects_inactive() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_original_shareflags() : shareinfo
• set_phase_start() : initial_params , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number
• set_random_effects_active() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_random_effects_inactive() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_recend() : fixed_smartlist2 , test_smartlist , fixed_smartlist
• set_RETURN_ARRAYS_SIZE() : gradient_structure
• set_reverse() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_runtime() : function_minimizer
• set_runtime_crit() : function_minimizer
• set_runtime_maxfn() : function_minimizer
• set_scalefactor() : initial_params , param_init_vector_vector , param_init_bounded_vector_vector , param_init_matrix_vector , param_init_bounded_matrix_vector , param_init_number_vector , param_init_bounded_number_vector , param_init_bounded_number_matrix , initial_df1b2params
• set_shareflags() : shareinfo
• set_simulation_bounds() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array
• set_size() : dfpool , adpool
• set_stepnumber() : likeprof_params
• set_stepsize() : likeprof_params
• set_u_dot() : laplace_approximation_calculator , init_df1b2variable
• set_use_eof() : cifstream
• set_USE_FOR_HESSIAN() : gradient_structure
• set_value() : param_init_matrix , re_df1b2_init_bounded_vector , df1b2_init_bounded_dev_vector , funnel_init_df1b2matrix , df1b2_init_bounded_vector , df1b2_init_vector , funnel_init_bounded_df1b2vector , initial_params , param_init_vector , param_init_bounded_vector , param_init_bounded_dev_vector , param_init_number , param_init_bounded_number , param_init_bounded_matrix , param_init_d3array , funnel_init_var , funnel_init_df1b2variable , funnel_init_bounded_df1b2vector , funnel_init_df1b2vector , funnel_init_df1b2matrix , init_df1b2vector , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number , df1b2_init_bounded_number , df1b2_init_bounded_vector , random_effects_bounded_vector_info , re_df1b2_init_bounded_vector , df1b2_init_bounded_matrix , df1b2_init_bounded_dev_vector
• set_value_inv() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array
• set_yes_derivatives() : df1b2_gradlist
• set_YES_SAVE_VARIABLES_VALUES() : gradient_structure
• setindex() : stddev_params , param_stddev_number
• setshare() : initial_params , param_init_vector , param_init_matrix , param_init_d3array
• setup_quadprior_calcs() : function_minimizer
• sfabs : prevariable , dvar_vector
• sflags : shareinfo
• sgibbs_mcmc_routine() : function_minimizer
• shallow_copy() : dvector , dvar_vector , dmatrix , d3_array , i3_array , d4_array , dvar4_array , i4_array , d5_array , dvar5_array , d6_array , dvar6_array , imatrix , ivector , dvar3_array , i5_array , dvar_matrix
• shape : df3_one_vector , df1_one_vector , df1_two_vector , df1_two_matrix , df1_three_vector , dvector , ptr_vector , lvector , df1b2matrix , dvar_matrix , dmatrix , d3_array , i3_array , dvar3_array , d4_array , dvar4_array , df3_three_vector , i5_array , dvar7_array , adstring_array , df3_one_matrix , d5_array , dvar5_array , df3_two_vector , dvar6_array , df3_two_matrix , d6_array , imatrix , ivector , df1b2vector , df1b23array , lmatrix , df3_three_matrix , d7_array , i4_array , df1_three_matrix , dvar_vector , adstring , df1_one_matrix
• share_flags : initial_params
• shared_memory : dfsdmat
• shared_set_value() : param_init_d3array , initial_params , param_init_vector , param_init_matrix , param_init_bounded_matrix
• shared_set_value_inv() : param_init_bounded_matrix , param_init_matrix , initial_params , param_init_d3array , param_init_vector
• shared_size_count() : param_init_matrix , param_init_vector , param_init_d3array , initial_params
• shareinfo() : shareinfo
• shift() : ivector , vector_shapex , banded_symmetric_dmatrix , df1b2vector , vector_shape , dvar_vector , ptr_vector , lvector , banded_lower_triangular_dmatrix , dvector
• sig : fmmt1 , fmmq , fmm
• sigma : param_likeprof_number
• sigmoid : dvar_vector , prevariable
• signature() : cifstream
• signature_line : cifstream
• sin : prevariable , dvar_vector
• sing_val_decomp() : sing_val_decomp
• sinh : prevariable
• size() : dvar5_array , dvar6_array , d6_array , dvar_vector , d5_array , i5_array , i4_array , dfpool , ptr_vector , adpool , i4_array , adstring , d5_array , arr_link , d7_array , dvector , lvector , dfsdmat , adstring_array , i5_array , dvar5_array , dvar6_array , d7_array , dvar7_array , df1b2matrix , df1b23array , adstring_shape , dvar7_array , df1b2vector , ivector
• size_count() : param_stddev_number , param_init_d3array , param_init_bounded_vector , param_stddev_matrix , param_likeprof_number , param_init_number , param_stddev_vector , stddev_params , param_init_vector , initial_params , param_init_matrix
• slave_gradcalc : dlink , grad_stack_entry , dlist , grad_stack , gradient_structure
• slice_max : three_array_shape
• slice_min : three_array_shape
• slicemax() : i5_array , d4_array , i5_array , dvar3_array , dvar4_array , i4_array , d3_array , dvar4_array , i3_array , i4_array , d4_array
• slicemin() : d4_array , i4_array , dvar4_array , i5_array , dvar4_array , dvar3_array , i4_array , d4_array , d3_array , i3_array
• slicesize() : dvar3_array , d3_array , i5_array , dvar4_array , i4_array , d4_array , i3_array , i5_array , i4_array , d4_array , dvar4_array
• smart_counter() : smart_counter
• smartlist() : smartlist
• sob_routine() : function_minimizer
• sobol_importance_routine() : function_minimizer
• solve() : safe_choleski_solver
• sparse_count : laplace_approximation_calculator
• sparse_count_adjoint : laplace_approximation_calculator
• sparse_hessian_flag : laplace_approximation_calculator
• sparse_iterator : laplace_approximation_calculator
• sparse_symbolic : laplace_approximation_calculator
• sparse_symbolic2 : laplace_approximation_calculator
• sparse_triplet : laplace_approximation_calculator
• sparse_triplet2 : laplace_approximation_calculator
• spdll_exception() : spdll_exception
• spminflag : function_minimizer
• sqr : prevariable
• sqrt : prevariable
• standard_type3_loop() : laplace_approximation_calculator
• start_get_importance_sampling_comnponent() : function_minimizer
• status : arr_link
• stddev_curvscale() : initial_params
• stddev_number_ptr : stddev_params
• stddev_params() : stddev_params
• stddev_scale() : initial_df1b2params , initial_params
• stddev_vscale() : initial_params
• stddevptr : stddev_params
• step : fmmq , laplace_approximation_calculator
• stepbd : fmmq
• stepnumber : likeprof_params
• stepsize : likeprof_params
• stmin : fmmq
• stpmax : _lb3_1
• stpmin : _lb3_1
• str : adstring , string_parser , adstring
• straight_through_flag : initial_params
• string_parser() : string_parser
• sub() : dvar4_array , d4_array , dvar3_array , dvar_matrix , dmatrix , imatrix , dvector , banded_symmetric_dmatrix , d3_array , dvar5_array , dvar_vector , ivector
• subdir : ad_comm
• subdvector : vector_shape , vector_shapex
• sumsq : banded_symmetric_dmatrix , dmatrix , dvar_vector , dvar_matrix , dvector , banded_symmetric_dvar_matrix
• sz : adstring_shape