d3arr2a.cpp File Reference

(* $Id$)

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#include "fvar.hpp"

Go to the source code of this file.

Functions
d3_array	cos (const d3_array &m)
	Description not yet available.
d3_array	elem_div (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	elem_prod (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	exp (const d3_array &m)
	Description not yet available.
d3_array	log (const d3_array &m)
	Description not yet available.
double	norm (const d3_array &m)
	Description not yet available.
double	norm2 (const d3_array &m)
	Description not yet available.
d3_array	operator* (const d3_array &m1, double d)
	Description not yet available.
d3_array	operator* (double d, const d3_array &m2)
	Description not yet available.
d3_array	operator+ (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	operator+ (double d, const d3_array &m2)
	Description not yet available.
d3_array	operator+ (const d3_array &m1, double d)
	Description not yet available.
d3_array	operator- (const d3_array &m1, const d3_array &m2)
	Description not yet available.
d3_array	operator- (double d, const d3_array &m2)
	Description not yet available.
d3_array	operator- (const d3_array &m1, double d)
	Description not yet available.
d3_array	sin (const d3_array &m)
	Description not yet available.
double	sumsq (const d3_array &m)
d3_array	tan (const d3_array &m)
	Description not yet available.

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Detailed Description

Description not yet available.

Definition in file d3arr2a.cpp.

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Function Documentation

d3_array cos

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 62 of file d3arr2a.cpp.

Referenced by cos(), DF_dvsin(), DF_dvtan(), dfboundp(), ncos(), ndfboundp(), randn(), sin(), and tan().

d3_array elem_div	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 107 of file d3arr2a.cpp.

Referenced by laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::dep_hess_routine(), dmultinom(), dnorm(), dstudent_t(), elem_div(), eplogis(), generalized_Ricker1(), generalized_Ricker2(), get_ft(), Hassell(), Hill(), HollingII(), HollingIII(), HollingIV(), function_minimizer::likeprof_routine(), logistic(), logistic3(), logisticK(), Michaelis_Menten1(), Michaelis_Menten2(), function_minimizer::monte_carlo_routine(), multifan(), pearson_residuals(), initial_params::reset1(), and Shepherd().

d3_array elem_prod	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 92 of file d3arr2a.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::block_diagonal_calculations(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), dgamma(), dmultinom(), dnorm(), dstudent_t(), elem_prod(), generalized_Ricker1(), generalized_Ricker2(), get_ft(), get_solution_vector(), Gompertz(), Hassell(), Hill(), HollingII(), HollingIII(), HollingIV(), logistic(), logistic3(), logisticK(), Michaelis_Menten1(), Michaelis_Menten2(), monomolecular(), multifan(), neff(), nonrectangular_hyperbola(), normalized_gauss_hermite(), pearson_residuals(), Ricker(), Shepherd(), theta_logistic(), and initial_params::xinit1().

d3_array exp

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 32 of file d3arr2a.cpp.

Referenced by add_hist_values(), beta(), betai(), bounded_cumd_norm(), bounded_robust_multivariate_normal(), bounder(), boundp(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), cmvbvu_(), cmvphi_(), cumd_exp(), cumd_exponential(), cumd_logistic(), cumd_norm(), cumd_normal_logistic_mixture(), density_negbinomial(), df_cumd_normal_logistic_mixture(), df_cumd_normal_mixture(), DF_dvmfexp(), dfboundp(), dflogistic(), function_minimizer::do_gauss_hermite_integration(), function_minimizer::do_gauss_hermite_integration_multi(), eplogis(), exp(), gamma_density(), gcf(), generalized_Ricker1(), generalized_Ricker2(), laplace_approximation_calculator::generate_antithetical_rvs(), get_bounded_normal(), get_bounded_normal_virtual(), get_ft(), laplace_approximation_calculator::get_hessian_components_banded_lme(), laplace_approximation_calculator::get_hessian_from_components_lme(), get_initial_u(), Gompertz(), gser(), function_minimizer::hybrid_mcmc_routine(), inv_cumd_beta_stable(), inv_cumd_gamma(), inv_cumd_norm(), inv_cumd_norm_ln(), inv_cumd_norm_logistic(), inv_cumd_normal_logistic_mixture(), inv_cumd_normal_mixture(), log_der_logistic(), log_likelihood_mixture(), log_likelihood_mixture_02(), logistic(), logistic3(), logisticK(), make_preliminary_hist(), function_minimizer::mcmc_routine(), mfexp(), monomolecular(), mvbvu_(), mvphi_(), ndfboundp(), negbinomial_density(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), normal_tail_right(), function_minimizer::normalize_posterior_distribution(), normalized_gauss_hermite(), old_cumd_norm(), pow(), probing_bounded_multivariate_normal(), probing_bounded_multivariate_normal_mcmc(), randpoisson(), Ricker(), rmvlogistic(), robust_regression(), sgamma(), and theta_logistic().

d3_array log

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 17 of file d3arr2a.cpp.

Referenced by AD_pow_112(), AD_pow_12(), AD_pow_122(), AD_pow_2(), AD_pow_22(), AD_pow_222(), betai(), bounded_multivariate_normal(), bounded_multivariate_normal_mcmc(), bounded_multivariate_uniform(), bounded_multivariate_uniform_mcmc(), bounded_robust_multivariate_normal(), boundp(), boundpin(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), dbeta(), dbinom(), density_negbinomial(), DF_cdvpow(), DF_dvdvpow(), df_ln_det_choleski(), dgamma(), dinvgamma(), dlnorm(), dmultinom(), dmvlogistic(), dnbinom(), dnorm(), function_minimizer::do_gauss_hermite_integration(), function_minimizer::do_gauss_hermite_integration_multi(), dpois(), dstudent_t(), dunif(), dzinbinom(), expdev(), expm(), fcomp1(), gamma_density(), gammln(), gammlnguts(), gasdev(), gcf(), laplace_approximation_calculator::generate_antithetical_rvs(), get_bounded_cauchy(), get_bounded_mixture(), get_bounded_normal(), get_bounded_normal_virtual(), laplace_approximation_calculator::get_gradient_for_hessian_calcs(), function_minimizer::get_hybrid_monte_carlo_value(), get_initial_u(), get_ln_det(), gser(), function_minimizer::hybrid_mcmc_routine(), inv(), inv_cumd_beta_stable(), inv_cumd_exp(), inv_cumd_exponential(), inv_cumd_gamma(), inv_cumd_logistic(), inv_cumd_mixture(), inv_cumd_mixture_02(), inv_cumd_norm_inner(), inv_cumd_norm_ln(), inv_cumd_norm_logistic(), invLogitProp(), function_minimizer::likeprof_routine(), ln_det(), ln_det_choleski(), ln_det_choleski_error(), ln_normal_tail_right(), log(), log_density_cauchy(), log_density_negbinomial(), log_density_poisson(), log_der_logistic(), log_gamma_density(), log_likelihood_mixture(), log_likelihood_mixture_02(), log_negbinomial_density(), lower_triangular_ln_det(), function_minimizer::mcmc_routine(), multifan(), multivariate_mixture(), negbinomial_density(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), nllBeta(), nllBinomial(), nllDirichlet(), nllGamma(), nllInverseGamma(), nllLognormal(), nllLognormal2(), nllMultiNomial(), nllNegativeBinomial(), nllNormal(), nllNormal2(), nllPoisson(), normalize_p(), pow(), probing_bounded_multivariate_normal(), probing_bounded_multivariate_normal_mcmc(), randn(), randpoisson(), regression(), rgamma(), rmvlogistic(), robust_regression(), function_minimizer::sd_routine(), funnel_init_df1b2variable::set_value(), random_effects_bounded_vector_info::set_value(), re_df1b2_init_bounded_vector::set_value(), set_value(), sgamma(), and solve().

double norm

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 152 of file d3arr2a.cpp.

Referenced by laplace_approximation_calculator::do_newton_raphson_state_space(), fcomp1(), fmmt1::fmin2(), laplace_approximation_calculator::generate_antithetical_rvs(), function_minimizer::get_particular_grad(), function_minimizer::hess_inv(), function_minimizer::hess_routine_and_constraint(), function_minimizer::likeprof_routine(), laplace_approximation_calculator::lincg(), laplace_approximation_calculator::local_minimization_routine(), orthpoly2(), function_minimizer::projected_hess_determinant(), read_hessian_matrix_and_scale1(), function_minimizer::sd_routine(), seldif_basis(), safe_choleski_solver::solve(), std_dev(), laplace_approximation_calculator::test_trust_region_method(), update1(), and var().

double norm2

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 167 of file d3arr2a.cpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), choleski_decomp_trust_bound(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), dlnorm(), dmvlogistic(), dnorm(), fcomp1(), fmmt1::fmin(), function_minimizer::hess_routine_and_constraint(), function_minimizer::hybrid_mcmc_routine(), laplace_approximation_calculator::lincg(), multifan(), neff(), nllLognormal(), nllLognormal2(), nllNormal(), nllNormal2(), norm(), norm2(), orthpoly(), orthpoly_constant_begin(), orthpoly_constant_begin_end(), regression(), and sumsq().

d3_array operator*	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 242 of file d3arr2a.cpp.

d3_array operator*	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 257 of file d3arr2a.cpp.

d3_array operator+	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 122 of file d3arr2a.cpp.

d3_array operator+	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 182 of file d3arr2a.cpp.

d3_array operator+	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 212 of file d3arr2a.cpp.

d3_array operator-	(	const d3_array &	m1,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 137 of file d3arr2a.cpp.

d3_array operator-	(	double	d,
		const d3_array &	m2
	)

Description not yet available.

Parameters:

Definition at line 197 of file d3arr2a.cpp.

d3_array operator-	(	const d3_array &	m1,
		double	d
	)

Description not yet available.

Parameters:

Definition at line 227 of file d3arr2a.cpp.

d3_array sin

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 47 of file d3arr2a.cpp.

Referenced by boundp(), cmvbvu_(), cos(), DF_dvcos(), gammln(), mvbvu_(), nsin(), sin(), and tan().

double sumsq

(

const d3_array &

m

)

Definition at line 176 of file d3arr2a.cpp.

d3_array tan

(

const d3_array &

m

)

Description not yet available.

Parameters:

Definition at line 77 of file d3arr2a.cpp.

Referenced by AD_df1_tan(), AD_df2_tan(), AD_df3_tan(), dftinv(), param_init_bounded_vector::get_jacobian(), inv_cumd_cauchy(), randpoisson(), set_value_inv_mc(), tan(), and tan_address().