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initial_params Class Reference

Description not yet available. More...

#include <admodel.h>

Public Member Functions

 initial_params (void)
 Default constructor.
virtual void add_to_list (void)
virtual void add_value (const dvector &, const int &)=0
virtual void add_value (const dvector &, const dvector &, const int &, const double &, const dvector &)=0
void allocate (int _phase_start)
virtual void bsave_value (uostream &uos)=0
virtual void copy_value_to_vector (const dvector &, const int &)=0
virtual void curv_scale (const dvector &d, const dvector &x, const int &ii)=0
virtual void dev_correction (const dmatrix &, const int &)=0
double get_initial_value (void)
virtual void get_jacobian (const dvector &, const dvector &, const int &)=0
int get_phase_start (void)
double get_scalefactor ()
virtual void hess_scale (const dvector &d, const dvector &x, const int &ii)=0
virtual const char * label ()=0
virtual void mc_scale (const dvector &d, const dvector &x, const int &ii)=0
virtual void pvm_pack (void)=0
virtual void pvm_unpack (void)=0
void restore_phase_start (void)
virtual void restore_value (const ifstream &ifs)=0
virtual void restore_value_from_vector (const dvector &, const int &)=0
virtual void save_value (ofstream &ofs)=0
virtual void save_value (const ofstream &ofs, int prec)=0
virtual void save_value (const ofstream &ofs, int prec, const dvector &, int &offset)=0
virtual void sd_scale (const dvector &d, const dvector &x, const int &ii)=0
virtual void sd_vscale (const dvar_vector &d, const dvar_vector &x, const int &ii)=0
void set_active_flag (void)
void set_inactive_flag (void)
void set_initial_value (double x)
virtual void set_only_random_effects_active ()
virtual void set_only_random_effects_inactive ()
void set_phase_start (int x)
virtual void set_random_effects_active ()
virtual void set_random_effects_inactive ()
void set_scalefactor (const double)
virtual void set_simulation_bounds (const dmatrix &symbds, const int &ii)=0
virtual void set_value (const dvar_vector &, const int &, const dvariable &pen)=0
virtual void set_value_inv (const dvector &, const int &)=0
virtual void setshare (const index_type &sf, const index_type &af)
virtual void shared_set_value (const dvar_vector &, const int &, const dvariable &pen)
virtual void shared_set_value_inv (const dvector &, const int &)
virtual int shared_size_count (void)
virtual int size_count (void)=0

Static Public Member Functions

static void add_random_vector (const dvector &x)
static void add_random_vector (const dvector &y, const dvector &x, const double &ll, const dvector &diag)
static void copy_all_values (const dvector &x, const int &ii)
static int correct_for_dev_objects (const dmatrix &H)
static void get_jacobian_value (const dvector &y, const dvector &jac)
static adstring get_reportfile_name (void)
static int montecarlo_scale (const dvector &d, const dvector &x)
 Description not yet available.
static int num_active_calc (void)
static int nvarcalc ()
static int nvarcalc_all (void)
 Description not yet available.
static void read (void)
static dvariable reset (const dvar_vector &x)
static dvariable reset (const dvector &x)
static dvariable reset (const dvar_vector &x, const dvector &pen)
static dvariable reset1 (const dvar_vector &x, const dvector &g)
static dvariable reset_all (const dvar_vector &x, const dvector &pen)
 Description not yet available.
static void restore (const ifstream &ifs)
static void restore_all_values (const dvector &x, const int &ii)
static void restore_start_phase (void)
static void save (void)
static void save (const ofstream &ofs, int prec)
static void save_all (const ofstream &_ofs, int prec, const dvector &g)
static void set_active_only_random_effects (void)
static void set_active_random_effects (void)
static void set_all_simulation_bounds (const dmatrix &symbds)
static void set_all_simulation_bounds (const dmatrix &symbds, const dvector &)
static void set_inactive_only_random_effects (void)
static void set_inactive_random_effects (void)
static int stddev_curvscale (const dvector &d, const dvector &x)
static int stddev_scale (const dvector &d, const dvector &x)
static int stddev_vscale (const dvar_vector &d, const dvar_vector &x)
static void xinit (const dvector &x)
static void xinit1 (const dvector &x, const dvector &g)
static void xinit_all (const dvector &x)
 Description not yet available.

Public Attributes

int phase_save
int phase_start
int phase_stop

Static Public Attributes

static int current_phase = 1
static const int max_num_initial_params = 250
static int max_number_phases = 1
static int mc_phase = 0
static int mceval_phase = 0
static int num_active_initial_params
static int num_initial_params = 0
static int restart_phase = 0
static int sd_phase = 0
static int straight_through_flag = 0
static adlist_ptr varsptr

Protected Member Functions

virtual ~initial_params ()
 Destructor.

Protected Attributes

int active_flag
double initial_value
int initial_value_flag
double scalefactor
shareinfo * share_flags

Friends

int active (const initial_params &ip)
class function_minimizer

Detailed Description

Description not yet available.

Parameters:

Definition at line 822 of file admodel.h.

Constructor & Destructor Documentation

initial_params::~initial_params ( ) [protected, virtual]

Destructor.

Definition at line 65 of file model.cpp.

initial_params::initial_params ( void  )

Default constructor.

Definition at line 82 of file model.cpp.

Member Function Documentation

void initial_params::add_random_vector ( const dvector &  x) [static]

Definition at line 9 of file mod_mc1.cpp.

Referenced by function_minimizer::mcmc_routine(), and function_minimizer::monte_carlo_routine().

void initial_params::add_random_vector ( const dvector &  y,
const dvector &  x,
const double &  ll,
const dvector &  diag 
) [static]

Definition at line 11 of file mod_mc3.cpp.

void initial_params::add_to_list ( void  ) [virtual]

Definition at line 136 of file model.cpp.

Referenced by allocate().

virtual void initial_params::add_value ( const dvector &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by add_random_vector().

virtual void initial_params::add_value ( const dvector &  ,
const dvector &  ,
const int &  ,
const double &  ,
const dvector &   
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

void initial_params::allocate ( int  _phase_start)

Definition at line 124 of file model.cpp.

Referenced by dll_param_init_number::allocate().

virtual void initial_params::bsave_value ( uostream &  uos) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by save().

void initial_params::copy_all_values ( const dvector &  x,
const int &  ii 
) [static]

Definition at line 9 of file model3.cpp.

Referenced by function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), function_minimizer::mcmc_routine(), function_minimizer::monte_carlo_routine(), and function_minimizer::sd_routine().

virtual void initial_params::copy_value_to_vector ( const dvector &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by copy_all_values().

int initial_params::correct_for_dev_objects ( const dmatrix &  H) [static]

Definition at line 156 of file model.cpp.

virtual void initial_params::curv_scale ( const dvector &  d,
const dvector &  x,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by stddev_curvscale().

virtual void initial_params::dev_correction ( const dmatrix &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_dev_vector, param_init_bounded_vector, and param_init_vector.

Referenced by correct_for_dev_objects().

double initial_params::get_initial_value ( void  )

Definition at line 103 of file model.cpp.

virtual void initial_params::get_jacobian ( const dvector &  ,
const dvector &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by get_jacobian_value().

void initial_params::get_jacobian_value ( const dvector &  y,
const dvector &  jac 
) [static]

Definition at line 23 of file mod_mc3.cpp.

int initial_params::get_phase_start ( void  )

Definition at line 114 of file model.cpp.

adstring initial_params::get_reportfile_name ( void  ) [static]

Definition at line 1230 of file model.cpp.

double initial_params::get_scalefactor ( void  )

Definition at line 39 of file model.cpp.

virtual void initial_params::hess_scale ( const dvector &  d,
const dvector &  x,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

virtual const char* initial_params::label ( ) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

virtual void initial_params::mc_scale ( const dvector &  d,
const dvector &  x,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by montecarlo_scale().

int initial_params::montecarlo_scale ( const dvector &  d,
const dvector &  x 
) [static]

Description not yet available.

Parameters:

Definition at line 21 of file mc_scale.cpp.

Referenced by function_minimizer::monte_carlo_routine().

int initial_params::num_active_calc ( void  ) [static]

Definition at line 196 of file model.cpp.

Referenced by function_minimizer::sd_routine().

int initial_params::nvarcalc ( ) [static]

Definition at line 171 of file model.cpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations(), function_minimizer::dep_hess_routine(), function_minimizer::depvars_routine(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), laplace_approximation_calculator::do_one_feval(), evaluate_function(), evaluate_function_gradient(), evaluate_function_no_derivatives(), evaluate_function_quiet(), evaluate_function_with_quadprior(), fmmt1::fmin2(), function_minimizer::hess_determinant(), function_minimizer::hess_inv(), function_minimizer::hess_routine_and_constraint(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_routine_slave_random_effects(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), function_minimizer::limited_memory_quasi_newton(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_eval(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::monte_carlo_routine(), function_minimizer::normalize_posterior_distribution(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), function_minimizer::projected_hess_determinant(), function_minimizer::quasi_newton_block(), save(), function_minimizer::sd_routine(), function_minimizer::trust_region_update(), and function_minimizer::unrestricted_hess_determinant().

int initial_params::nvarcalc_all ( void  ) [static]

Description not yet available.

Parameters:

Definition at line 17 of file nvarcall.cpp.

Referenced by laplace_approximation_calculator::do_one_feval(), laplace_approximation_calculator::get_hessian_components_banded_lme(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), and function_minimizer::trust_region_update().

virtual void initial_params::pvm_pack ( void  ) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

virtual void initial_params::pvm_unpack ( void  ) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

static void initial_params::read ( void  ) [static]
dvariable initial_params::reset ( const dvar_vector &  x) [static]

Definition at line 364 of file model.cpp.

Referenced by function_minimizer::adamoeba(), function_minimizer::amxxx(), laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::banded_calculations_lme(), laplace_approximation_calculator::block_diagonal_calculations(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::dep_hess_routine(), function_minimizer::depvars_routine(), do_evaluation(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), laplace_approximation_calculator::do_one_feval(), evaluate_function(), evaluate_function_gradient(), evaluate_function_no_derivatives(), evaluate_function_quiet(), evaluate_function_with_quadprior(), laplace_approximation_calculator::get_fx_fu(), laplace_approximation_calculator::get_gradient_lme(), laplace_approximation_calculator::get_gradient_lme_hp(), laplace_approximation_calculator::get_hessian_from_components_lme(), function_minimizer::get_hybrid_monte_carlo_value(), function_minimizer::get_monte_carlo_value(), function_minimizer::get_particular_grad(), laplace_approximation_calculator::get_uhat_lm_newton2(), laplace_approximation_calculator::get_uhat_quasi_newton(), laplace_approximation_calculator::get_uhat_quasi_newton_block_diagonal(), function_minimizer::hess_routine_and_constraint(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_slave_random_effects(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::limited_memory_quasi_newton(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::neldmead(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), function_minimizer::pvm_master_get_monte_carlo_value(), function_minimizer::pvm_slave_get_monte_carlo_value(), function_minimizer::quasi_newton_block(), function_minimizer::set_initial_simplex(), and laplace_approximation_calculator::test_trust_region_method().

dvariable initial_params::reset ( const dvector &  x) [static]

Definition at line 388 of file model.cpp.

dvariable initial_params::reset ( const dvar_vector &  x,
const dvector &  pen 
) [static]

Definition at line 331 of file model.cpp.

dvariable initial_params::reset1 ( const dvar_vector &  x,
const dvector &  g 
) [static]

Definition at line 349 of file model.cpp.

dvariable initial_params::reset_all ( const dvar_vector &  x,
const dvector &  __pen 
) [static]

Description not yet available.

Parameters:

Definition at line 45 of file nvarcall.cpp.

void initial_params::restore ( const ifstream &  ifs) [static]

Definition at line 9 of file model13.cpp.

void initial_params::restore_all_values ( const dvector &  x,
const int &  ii 
) [static]

Definition at line 95 of file model3.cpp.

Referenced by function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), function_minimizer::mcmc_eval(), function_minimizer::mcmc_routine(), and function_minimizer::monte_carlo_routine().

void initial_params::restore_phase_start ( void  )

Definition at line 302 of file model.cpp.

Referenced by restore_start_phase().

void initial_params::restore_start_phase ( void  ) [static]

Definition at line 294 of file model.cpp.

Referenced by function_minimizer::depvars_routine(), laplace_approximation_calculator::get_gradient_lme_hp(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_routine(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), function_minimizer::sd_routine(), and function_minimizer::trust_region_update().

virtual void initial_params::restore_value ( const ifstream &  ifs) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by restore().

virtual void initial_params::restore_value_from_vector ( const dvector &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by restore_all_values().

void initial_params::save ( void  ) [static]

Definition at line 401 of file model.cpp.

Referenced by function_minimizer::minimize().

void initial_params::save ( const ofstream &  ofs,
int  prec 
) [static]

Definition at line 9 of file model12.cpp.

void initial_params::save_all ( const ofstream &  _ofs,
int  prec,
const dvector &  g 
) [static]

Definition at line 86 of file model12.cpp.

virtual void initial_params::save_value ( ofstream &  ofs) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by save(), and save_all().

virtual void initial_params::save_value ( const ofstream &  ofs,
int  prec 
) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

virtual void initial_params::save_value ( const ofstream &  ofs,
int  prec,
const dvector &  ,
int &  offset 
) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

virtual void initial_params::sd_scale ( const dvector &  d,
const dvector &  x,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by stddev_scale().

virtual void initial_params::sd_vscale ( const dvar_vector &  d,
const dvar_vector &  x,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by stddev_vscale().

void initial_params::set_active_flag ( void  )

Definition at line 446 of file model.cpp.

Referenced by xinit(), and xinit1().

void initial_params::set_active_only_random_effects ( void  ) [static]

Definition at line 270 of file model.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::banded_calculations_lme(), laplace_approximation_calculator::block_diagonal_calculations(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), and function_minimizer::trust_region_update().

void initial_params::set_active_random_effects ( void  ) [static]

Definition at line 286 of file model.cpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), laplace_approximation_calculator::do_one_feval(), laplace_approximation_calculator::get_fx_fu(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::mcmc_eval(), function_minimizer::mcmc_routine(), and function_minimizer::sd_routine().

void initial_params::set_all_simulation_bounds ( const dmatrix &  symbds) [static]

Definition at line 25 of file montebds.cpp.

Referenced by function_minimizer::mcmc_routine().

static void initial_params::set_all_simulation_bounds ( const dmatrix &  symbds,
const dvector &   
) [static]
void initial_params::set_inactive_flag ( void  )

Definition at line 451 of file model.cpp.

void initial_params::set_inactive_only_random_effects ( void  ) [static]

Definition at line 278 of file model.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::banded_calculations_lme(), laplace_approximation_calculator::block_diagonal_calculations(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), laplace_approximation_calculator::get_fx_fu(), laplace_approximation_calculator::get_hessian_from_components_lme(), function_minimizer::hess_inv(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_routine_slave_random_effects(), function_minimizer::likeprof_routine(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::minimize(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), and laplace_approximation_calculator::test_trust_region_method().

void initial_params::set_inactive_random_effects ( void  ) [static]

Definition at line 307 of file model.cpp.

Referenced by function_minimizer::depvars_routine(), laplace_approximation_calculator::get_gradient_lme_hp(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), and function_minimizer::trust_region_update().

void initial_params::set_initial_value ( double  x)

Definition at line 97 of file model.cpp.

Referenced by param_init_vector_vector::allocate(), param_init_bounded_vector_vector::allocate(), param_init_matrix_vector::allocate(), param_init_bounded_matrix_vector::allocate(), param_init_number_vector::allocate(), and param_init_bounded_number_vector::allocate().

void initial_params::set_only_random_effects_active ( void  ) [virtual]

Reimplemented in random_effects_bounded_matrix, random_effects_matrix, random_effects_bounded_vector, random_effects_vector, random_effects_bounded_number, and random_effects_number.

Definition at line 1243 of file model.cpp.

Referenced by set_active_only_random_effects().

void initial_params::set_only_random_effects_inactive ( void  ) [virtual]

Reimplemented in random_effects_bounded_matrix, random_effects_matrix, random_effects_bounded_vector, random_effects_vector, random_effects_bounded_number, and random_effects_number.

Definition at line 1249 of file model.cpp.

Referenced by set_inactive_only_random_effects().

void initial_params::set_phase_start ( int  x)

Definition at line 108 of file model.cpp.

void initial_params::set_random_effects_active ( void  ) [virtual]

Reimplemented in random_effects_bounded_matrix, random_effects_matrix, random_effects_bounded_vector, random_effects_vector, random_effects_bounded_number, and random_effects_number.

Definition at line 1253 of file model.cpp.

Referenced by set_active_random_effects().

void initial_params::set_random_effects_inactive ( void  ) [virtual]

Reimplemented in random_effects_bounded_matrix, random_effects_matrix, random_effects_bounded_vector, random_effects_vector, random_effects_bounded_number, and random_effects_number.

Definition at line 1255 of file model.cpp.

Referenced by set_inactive_random_effects().

void initial_params::set_scalefactor ( const double  sf)

Definition at line 43 of file model.cpp.

virtual void initial_params::set_simulation_bounds ( const dmatrix &  symbds,
const int &  ii 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by set_all_simulation_bounds().

virtual void initial_params::set_value ( const dvar_vector &  ,
const int &  ,
const dvariable &  pen 
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_dev_vector, param_init_bounded_vector, and param_init_vector.

Referenced by reset(), reset1(), and reset_all().

virtual void initial_params::set_value_inv ( const dvector &  ,
const int &   
) [pure virtual]

Implemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, param_init_bounded_number, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by xinit(), xinit1(), and xinit_all().

void initial_params::setshare ( const index_type &  sf,
const index_type &  af 
) [virtual]

Reimplemented in param_init_d3array, param_init_matrix, and param_init_vector.

Definition at line 173 of file shared.cpp.

void initial_params::shared_set_value ( const dvar_vector &  x,
const int &  ii,
const dvariable &  pen 
) [virtual]

Reimplemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, and param_init_vector.

Definition at line 23 of file shared.cpp.

Referenced by reset().

void initial_params::shared_set_value_inv ( const dvector &  x,
const int &  ii 
) [virtual]

Reimplemented in param_init_d3array, param_init_bounded_matrix, param_init_matrix, and param_init_vector.

Definition at line 31 of file shared.cpp.

Referenced by xinit().

int initial_params::shared_size_count ( void  ) [virtual]

Reimplemented in param_init_d3array, param_init_matrix, and param_init_vector.

Definition at line 15 of file shared.cpp.

Referenced by nvarcalc().

virtual int initial_params::size_count ( void  ) [pure virtual]

Implemented in param_init_d3array, param_init_matrix, param_init_number, param_init_bounded_vector, and param_init_vector.

Referenced by nvarcalc(), and nvarcalc_all().

int initial_params::stddev_curvscale ( const dvector &  d,
const dvector &  x 
) [static]

Definition at line 233 of file model.cpp.

Referenced by laplace_approximation_calculator::block_diagonal_calculations().

int initial_params::stddev_scale ( const dvector &  d,
const dvector &  x 
) [static]

Definition at line 221 of file model.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::block_diagonal_calculations(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::dep_hess_routine(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), function_minimizer::mcmc_routine(), function_minimizer::monte_carlo_routine(), and function_minimizer::sd_routine().

int initial_params::stddev_vscale ( const dvar_vector &  d,
const dvar_vector &  x 
) [static]

Definition at line 210 of file model.cpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), and function_minimizer::get_hybrid_monte_carlo_value().

void initial_params::xinit ( const dvector &  x) [static]

Definition at line 245 of file model.cpp.

Referenced by laplace_approximation_calculator::banded_calculations(), calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_importance_sample_shess(), calculate_laplace_approximation(), laplace_approximation_calculator::default_calculations_check_derivatives(), function_minimizer::dep_hess_routine(), function_minimizer::depvars_routine(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), fmmt1::fmin2(), laplace_approximation_calculator::get_fx_fu(), laplace_approximation_calculator::get_gradient_lme(), laplace_approximation_calculator::get_gradient_lme_hp(), laplace_approximation_calculator::get_hessian_from_components_lme(), function_minimizer::get_particular_grad(), laplace_approximation_calculator::get_uhat_lm_newton(), laplace_approximation_calculator::get_uhat_lm_newton2(), laplace_approximation_calculator::get_uhat_quasi_newton(), laplace_approximation_calculator::get_uhat_quasi_newton_block_diagonal(), laplace_approximation_calculator::get_uhat_quasi_newton_qd(), function_minimizer::hess_inv(), function_minimizer::hess_routine_and_constraint(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_routine_slave_random_effects(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), function_minimizer::mcmc_eval(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::monte_carlo_routine(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), and function_minimizer::sd_routine().

void initial_params::xinit1 ( const dvector &  x,
const dvector &  g 
) [static]

Definition at line 315 of file model.cpp.

void initial_params::xinit_all ( const dvector &  _x) [static]

Description not yet available.

Parameters:

Definition at line 31 of file nvarcall.cpp.

Referenced by laplace_approximation_calculator::get_hessian_components_banded_lme(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), and function_minimizer::trust_region_update().

Friends And Related Function Documentation

int active ( const initial_params &  ip) [friend]

Definition at line 456 of file model.cpp.

friend class function_minimizer [friend]

Definition at line 963 of file admodel.h.

Member Data Documentation

int initial_params::active_flag [protected]

Definition at line 829 of file admodel.h.

Referenced by active(), initial_params(), set_active_flag(), and set_inactive_flag().

int initial_params::current_phase = 1 [static]

Definition at line 853 of file admodel.h.

Referenced by add_random_vector(), function_minimizer::computations1(), copy_all_values(), correct_for_dev_objects(), get_jacobian_value(), get_reportfile_name(), initial_params(), function_minimizer::likeprof_routine(), function_minimizer::limited_memory_quasi_newton(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_eval(), function_minimizer::minimize(), montecarlo_scale(), num_active_calc(), nvarcalc(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), function_minimizer::quasi_newton_block(), function_minimizer::random_effects_maximization(), reset(), reset1(), restore_all_values(), save(), save_all(), function_minimizer::sd_routine(), set_all_simulation_bounds(), param_init_vector::setshare(), param_init_matrix::setshare(), param_init_vector::shared_set_value(), param_init_matrix::shared_set_value(), param_init_bounded_matrix::shared_set_value(), param_init_vector::shared_size_count(), param_init_matrix::shared_size_count(), param_init_d3array::shared_size_count(), stddev_curvscale(), stddev_scale(), stddev_vscale(), function_minimizer::trust_region_update(), xinit(), and xinit1().

double initial_params::initial_value [protected]

Definition at line 831 of file admodel.h.

Referenced by param_init_vector::allocate(), param_init_bounded_vector::allocate(), param_init_number::allocate(), param_init_bounded_number::allocate(), param_init_matrix::allocate(), param_init_bounded_matrix::allocate(), param_init_d3array::allocate(), get_initial_value(), initial_params(), and set_initial_value().

int initial_params::initial_value_flag [protected]

Definition at line 830 of file admodel.h.

Referenced by param_init_bounded_vector::allocate(), param_init_bounded_number::allocate(), param_init_bounded_matrix::allocate(), initial_params(), and set_initial_value().

const int initial_params::max_num_initial_params = 250 [static]

Definition at line 849 of file admodel.h.

Referenced by add_to_list().

int initial_params::max_number_phases = 1 [static]

Definition at line 852 of file admodel.h.

Referenced by allocate(), function_minimizer::computations1(), get_reportfile_name(), function_minimizer::likeprof_routine(), function_minimizer::mcmc_eval(), function_minimizer::minimize(), function_minimizer::prof_minimize(), function_minimizer::prof_minimize_re(), and save().

int initial_params::mc_phase = 0 [static]

Definition at line 856 of file admodel.h.

Referenced by ad_make_code_reentrant(), laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::do_newton_raphson_banded(), laplace_approximation_calculator::do_newton_raphson_state_space(), evaluate_function(), laplace_approximation_calculator::get_uhat_lm_newton(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::mcmc_routine(), function_minimizer::monte_carlo_routine(), param_init_bounded_vector::sd_scale(), param_init_bounded_number::sd_scale(), df1b2_init_bounded_number::sd_scale(), df1b2_init_bounded_vector::sd_scale(), param_init_bounded_vector::set_value(), param_init_bounded_dev_vector::set_value(), df1b2_init_bounded_vector::set_value(), and param_init_bounded_vector::set_value_inv().

int initial_params::mceval_phase = 0 [static]

Definition at line 857 of file admodel.h.

Referenced by ad_make_code_reentrant(), and function_minimizer::computations().

int initial_params::num_active_initial_params [static]

Definition at line 851 of file admodel.h.

int initial_params::num_initial_params = 0 [static]

Definition at line 848 of file admodel.h.

Referenced by ad_make_code_reentrant(), add_random_vector(), add_to_list(), copy_all_values(), correct_for_dev_objects(), get_jacobian_value(), laplace_approximation_calculator::get_uhat_quasi_newton_qd(), montecarlo_scale(), num_active_calc(), nvarcalc(), nvarcalc_all(), reset(), reset1(), reset_all(), restore(), restore_all_values(), restore_start_phase(), save(), save_all(), function_minimizer::sd_routine(), set_active_only_random_effects(), set_active_random_effects(), set_all_simulation_bounds(), set_inactive_only_random_effects(), set_inactive_random_effects(), stddev_curvscale(), stddev_scale(), stddev_vscale(), xinit(), xinit1(), xinit_all(), and ~initial_params().

int initial_params::phase_save

Definition at line 859 of file admodel.h.

Referenced by allocate(), initial_params(), restore_phase_start(), random_effects_number::set_only_random_effects_active(), random_effects_bounded_number::set_only_random_effects_active(), random_effects_vector::set_only_random_effects_active(), random_effects_bounded_vector::set_only_random_effects_active(), random_effects_matrix::set_only_random_effects_active(), random_effects_bounded_matrix::set_only_random_effects_active(), set_only_random_effects_inactive(), set_phase_start(), random_effects_number::set_random_effects_active(), random_effects_bounded_number::set_random_effects_active(), random_effects_vector::set_random_effects_active(), random_effects_bounded_vector::set_random_effects_active(), random_effects_matrix::set_random_effects_active(), and random_effects_bounded_matrix::set_random_effects_active().

int initial_params::phase_start

Definition at line 858 of file admodel.h.

Referenced by add_random_vector(), allocate(), copy_all_values(), correct_for_dev_objects(), get_jacobian_value(), get_phase_start(), initial_params(), montecarlo_scale(), num_active_calc(), nvarcalc(), reset(), reset1(), restore_all_values(), restore_phase_start(), save_all(), set_all_simulation_bounds(), random_effects_number::set_only_random_effects_active(), random_effects_bounded_number::set_only_random_effects_active(), random_effects_vector::set_only_random_effects_active(), random_effects_bounded_vector::set_only_random_effects_active(), random_effects_matrix::set_only_random_effects_active(), random_effects_bounded_matrix::set_only_random_effects_active(), set_only_random_effects_active(), random_effects_number::set_only_random_effects_inactive(), random_effects_bounded_number::set_only_random_effects_inactive(), random_effects_vector::set_only_random_effects_inactive(), random_effects_bounded_vector::set_only_random_effects_inactive(), random_effects_matrix::set_only_random_effects_inactive(), random_effects_bounded_matrix::set_only_random_effects_inactive(), set_only_random_effects_inactive(), set_phase_start(), random_effects_number::set_random_effects_active(), random_effects_bounded_number::set_random_effects_active(), random_effects_vector::set_random_effects_active(), random_effects_bounded_vector::set_random_effects_active(), random_effects_matrix::set_random_effects_active(), random_effects_bounded_matrix::set_random_effects_active(), random_effects_number::set_random_effects_inactive(), random_effects_bounded_number::set_random_effects_inactive(), random_effects_vector::set_random_effects_inactive(), random_effects_bounded_vector::set_random_effects_inactive(), random_effects_matrix::set_random_effects_inactive(), random_effects_bounded_matrix::set_random_effects_inactive(), stddev_curvscale(), stddev_scale(), stddev_vscale(), xinit(), and xinit1().

int initial_params::phase_stop

Definition at line 860 of file admodel.h.

int initial_params::restart_phase = 0 [static]

Definition at line 854 of file admodel.h.

Referenced by function_minimizer::minimize().

double initial_params::scalefactor [protected]

Definition at line 832 of file admodel.h.

Referenced by get_scalefactor(), initial_params(), param_init_vector::sd_scale(), param_init_bounded_vector::sd_scale(), param_init_number::sd_scale(), param_init_bounded_number::sd_scale(), param_init_matrix::sd_scale(), param_init_bounded_matrix::sd_scale(), set_scalefactor(), param_init_vector::set_value(), param_init_bounded_vector::set_value(), param_init_number::set_value(), param_init_bounded_number::set_value(), param_init_matrix::set_value(), param_init_bounded_matrix::set_value(), param_init_vector::set_value_inv(), param_init_bounded_vector::set_value_inv(), param_init_number::set_value_inv(), param_init_bounded_number::set_value_inv(), param_init_matrix::set_value_inv(), and param_init_bounded_matrix::set_value_inv().

int initial_params::sd_phase = 0 [static]

Definition at line 855 of file admodel.h.

Referenced by ad_make_code_reentrant(), and function_minimizer::computations1().

shareinfo* initial_params::share_flags [protected]

Definition at line 826 of file admodel.h.

Referenced by initial_params(), nvarcalc(), reset(), param_init_vector::set_value_inv(), param_init_vector::setshare(), param_init_matrix::setshare(), param_init_vector::shared_set_value(), param_init_matrix::shared_set_value(), param_init_bounded_matrix::shared_set_value(), param_init_d3array::shared_set_value(), param_init_vector::shared_set_value_inv(), param_init_matrix::shared_set_value_inv(), param_init_vector::shared_size_count(), param_init_matrix::shared_size_count(), param_init_d3array::shared_size_count(), xinit(), and ~initial_params().

int initial_params::straight_through_flag = 0 [static]

Definition at line 850 of file admodel.h.

Referenced by laplace_approximation_calculator::banded_calculations(), laplace_approximation_calculator::block_diagonal_calculations(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), get_second_ders(), funnel_init_df1b2variable::set_value(), funnel_init_bounded_df1b2vector::set_value(), random_effects_bounded_vector_info::set_value(), re_df1b2_init_bounded_vector::set_value(), and set_value().

adlist_ptr initial_params::varsptr [static]

Definition at line 846 of file admodel.h.

Referenced by add_random_vector(), add_to_list(), copy_all_values(), correct_for_dev_objects(), get_jacobian_value(), laplace_approximation_calculator::get_uhat_quasi_newton_qd(), montecarlo_scale(), num_active_calc(), nvarcalc(), nvarcalc_all(), reset(), reset1(), reset_all(), restore(), restore_all_values(), restore_start_phase(), save(), save_all(), function_minimizer::sd_routine(), set_active_only_random_effects(), set_active_random_effects(), set_all_simulation_bounds(), set_inactive_only_random_effects(), set_inactive_random_effects(), stddev_curvscale(), stddev_scale(), stddev_vscale(), xinit(), xinit1(), and xinit_all().

List of all members.

The documentation for this class was generated from the following files:
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