, including all inherited members.
active(const initial_params &ip) | initial_params | [friend] |
active_flag | initial_params | [protected] |
add_random_vector(const dvector &x) | initial_params | [static] |
add_random_vector(const dvector &y, const dvector &x, const double &ll, const dvector &diag) | initial_params | [static] |
add_to_list(void) | initial_params | [virtual] |
add_value(const dvector &, const dvector &, const int &, const double &, const dvector &) | param_init_bounded_matrix | [protected, virtual] |
add_value(const dvector &, const int &) | param_init_bounded_matrix | [protected, virtual] |
allocate(const ad_integer &imin, const ad_integer &imax, const ad_integer &imin2, const ad_integer &imax2, const ad_double &_bmin, const ad_double &_bmax, const ad_integer &phase_start, const char *s) | param_init_bounded_matrix | |
allocate(int rmin, int rmax, int cmin, int cmax, double _minb, double _maxb, int phase_start=1, const char *="UNNAMED") | param_init_bounded_matrix | |
allocate(int rmin, int rmax, int cmin, int cmax, double _minb, double _maxb, const char *="UNNAMED") | param_init_bounded_matrix | |
allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, double _minb, double _maxb, const char *="UNNAMED") | param_init_bounded_matrix | |
allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, double _minb, double _maxb, int phase_start=1, const char *="UNNAMED") | param_init_bounded_matrix | |
param_init_matrix::allocate(int rmin, int rmax, int cmin, int cmax, int phase_start=1, const char *="UNNAMED") | param_init_matrix | |
param_init_matrix::allocate(int rmin, int rmax, int cmin, int cmax, const char *="UNNAMED") | param_init_matrix | |
param_init_matrix::allocate(const ad_integer &imin, const ad_integer &imax, const index_type &imin2, const index_type &imax2, const ad_integer &phase_start, const char *s) | param_init_matrix | |
param_init_matrix::allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, const char *="UNNAMED") | param_init_matrix | |
param_init_matrix::allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, int phase_start=1, const char *="UNNAMED") | param_init_matrix | |
param_init_matrix::named_dvar_matrix::allocate(int rmin, int rmax, const char *s) | named_dvar_matrix | [protected] |
param_init_matrix::named_dvar_matrix::allocate(const char *s) | named_dvar_matrix | [protected] |
param_init_matrix::named_dvar_matrix::allocate(int rmin, int rmax, const index_type &cmin, const index_type &cmax, const char *s) | named_dvar_matrix | [protected] |
param_init_matrix::dvar_matrix::allocate(int nrl, int nrh, int ncl, int nch) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(int nrl, int nrh) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(ad_integer nrl, ad_integer nrh) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(const dmatrix &m1) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(const dvar_matrix &m1) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(int nrl, int nrh, const ivector &ncl, const ivector &nch) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(int nrl, int nrh, int ncl, const ivector &nch) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(int nrl, int nrh, const ivector &ncl, int nch) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(void) | dvar_matrix | |
param_init_matrix::dvar_matrix::allocate(const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch) | dvar_matrix | |
initial_params::allocate(int _phase_start) | initial_params | |
banded_lower_triangular_dmatrix class | dvar_matrix | [friend] |
banded_lower_triangular_dvar_matrix class | dvar_matrix | [friend] |
banded_symmetric_dmatrix class | dvar_matrix | [friend] |
banded_symmetric_dvar_matrix class | dvar_matrix | [friend] |
bsave_value(uostream &uos) | param_init_matrix | [virtual] |
colfill(int j, const dvar_vector &v) | dvar_matrix | |
colfill_randn(const int &j, long int &n) | dvar_matrix | |
colfill_randn_ni(const int &j, long int &n) | dvar_matrix | |
colfill_randu(const int &j, long int &n) | dvar_matrix | |
colfill_randu_ni(const int &j, long int &n) | dvar_matrix | |
colfill_seqadd(const int &, double, double) | dvar_matrix | |
colfill_seqadd_ni(const int &, double, double) | dvar_matrix | |
colmax(void) const | dvar_matrix | [inline] |
colmin(void) const | dvar_matrix | [inline] |
colshift(int min) | dvar_matrix | |
colsize() const | dvar_matrix | [inline] |
copy_all_values(const dvector &x, const int &ii) | initial_params | [static] |
copy_status(const ostream &s, const dvar_matrix &m1) | dvar_matrix | [friend] |
copy_value_to_vector(const dvector &x, const int &ii) | param_init_matrix | [virtual] |
correct_for_dev_objects(const dmatrix &H) | initial_params | [static] |
current_phase | initial_params | [static] |
curv_scale(const dvector &d, const dvector &x, const int &) | param_init_bounded_matrix | [virtual] |
deallocate() | dvar_matrix | |
det(const dvar_matrix &) | dvar_matrix | [friend] |
dvar3_array class | dvar_matrix | [friend] |
dvar_matrix() | dvar_matrix | |
dvar_matrix(const banded_symmetric_dvar_matrix &v) | dvar_matrix | |
dvar_matrix(const banded_lower_triangular_dvar_matrix &v) | dvar_matrix | |
dvar_matrix(const param_init_vector_vector &) | dvar_matrix | |
dvar_matrix(const param_init_bounded_vector_vector &) | dvar_matrix | |
dvar_matrix(const param_init_bounded_number_matrix &) | dvar_matrix | |
dvar_matrix(const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch) | dvar_matrix | |
dvar_matrix(int, int, int, int) | dvar_matrix | |
dvar_matrix(int, int) | dvar_matrix | |
dvar_matrix(int, int, kkludge_object kk) | dvar_matrix | |
dvar_matrix(int, int, const ivector &, const ivector &) | dvar_matrix | |
dvar_matrix(int, int, int, const ivector &) | dvar_matrix | |
dvar_matrix(const dvar_matrix &) | dvar_matrix | |
dvar_matrix(const dmatrix &) | dvar_matrix | |
dvar_vector class | dvar_matrix | [friend] |
elem(int i) | dvar_matrix | [inline] |
elem(int i, int j) | dvar_matrix | [inline] |
elem(int i) const | dvar_matrix | [inline] |
elem(int i, int j) const | dvar_matrix | [inline] |
elem_value(register int i, register int j) | dvar_matrix | [inline] |
elem_value(register int i, register int j) const | dvar_matrix | [inline] |
fform(const char *, const dvar_matrix &) | dvar_matrix | [friend] |
fill(const char *) | dvar_matrix | |
fill_randn(long int &n) | dvar_matrix | |
fill_randn_ni(long int &n) | dvar_matrix | |
fill_randu(long int &n) | dvar_matrix | |
fill_randu_ni(long int &n) | dvar_matrix | |
fill_seqadd(double, double) | dvar_matrix | |
function_minimizer class | initial_params | [friend] |
get_initial_value(void) | initial_params | |
get_jacobian(const dvector &, const dvector &, const int &) | param_init_bounded_matrix | [protected, virtual] |
get_jacobian_value(const dvector &y, const dvector &jac) | initial_params | [static] |
get_maxb(void) | param_init_bounded_matrix | |
get_minb(void) | param_init_bounded_matrix | |
get_name(void) | model_name_tag | [inline] |
get_phase_start(void) | initial_params | |
get_reportfile_name(void) | initial_params | [static] |
get_scalefactor() | initial_params | |
hess_scale(const dvector &, const dvector &, const int &) | param_init_bounded_matrix | [inline, virtual] |
indexmax(void) const | dvar_matrix | [inline] |
indexmin(void) const | dvar_matrix | [inline] |
initial_params(void) | initial_params | |
initial_value | initial_params | [protected] |
initial_value_flag | initial_params | [protected] |
initialize(void) | dvar_matrix | |
inv(const dvar_matrix &) | dvar_matrix | [friend] |
label(void) | param_init_matrix | [virtual] |
ln_det(const dvar_matrix &, int &sgn) | dvar_matrix | [friend] |
max_num_initial_params | initial_params | [static] |
max_number_phases | initial_params | [static] |
maxb | param_init_bounded_matrix | [protected] |
mc_phase | initial_params | [static] |
mc_scale(const dvector &d, const dvector &x, const int &) | param_init_bounded_matrix | [virtual] |
mceval_phase | initial_params | [static] |
minb | param_init_bounded_matrix | [protected] |
model_name_tag(void) | model_name_tag | [inline] |
model_parameters class | named_dvar_matrix | [friend] |
montecarlo_scale(const dvector &d, const dvector &x) | initial_params | [static] |
name | model_name_tag | [protected] |
named_dvar_matrix(void) | named_dvar_matrix | [inline, protected] |
norm(const dvar_matrix &) | dvar_matrix | [friend] |
norm2(const dvar_matrix &) | dvar_matrix | [friend] |
num_active_calc(void) | initial_params | [static] |
num_active_initial_params | initial_params | [static] |
num_initial_params | initial_params | [static] |
nvarcalc() | initial_params | [static] |
nvarcalc_all(void) | initial_params | [static] |
operator!(void) const | dvar_matrix | [inline] |
operator()(int i) | dvar_matrix | [inline] |
operator()(int i) const | dvar_matrix | [inline] |
operator()(register int i, register int j) | dvar_matrix | [inline] |
operator()(register int i, register int j) const | dvar_matrix | [inline] |
operator*(const dvar_vector &, const dvar_matrix &) | dvar_matrix | [friend] |
operator*(const dvar_matrix &, const dvar_vector &) | dvar_matrix | [friend] |
operator*(const dvector &, const dvar_matrix &) | dvar_matrix | [friend] |
operator*(const dvar_matrix &, const dvector &) | dvar_matrix | [friend] |
operator*(const dvar_matrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator*(const dvar_matrix &, const dmatrix &) | dvar_matrix | [friend] |
operator*(const dmatrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator*=(const prevariable &t) | dvar_matrix | |
operator*=(double t) | dvar_matrix | |
operator+(const dvar_matrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator+(const dvar_matrix &, const dmatrix &) | dvar_matrix | [friend] |
operator+(const dmatrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator+(double, const dvar_matrix &) | dvar_matrix | [friend] |
operator+(const dvar_matrix &, double) | dvar_matrix | [friend] |
operator+(const dvariable &, const dvar_matrix &) | dvar_matrix | [friend] |
operator+(const dvar_matrix &, const dvariable &) | dvar_matrix | [friend] |
operator++(void) | dvar_matrix | [inline] |
operator+=(const dvar_matrix &x) | dvar_matrix | |
operator+=(const dmatrix &x) | dvar_matrix | |
operator-(double, const dvar_matrix &) | dvar_matrix | [friend] |
operator-(const dvar_matrix &, double) | dvar_matrix | [friend] |
operator-(const dvariable &, const dvar_matrix &) | dvar_matrix | [friend] |
operator-(const dvar_matrix &, const dvariable &) | dvar_matrix | [friend] |
operator-(const dvar_matrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator-(const dvar_matrix &, const dmatrix &) | dvar_matrix | [friend] |
operator-(const dmatrix &, const dvar_matrix &) | dvar_matrix | [friend] |
operator--(void) | dvar_matrix | [inline] |
operator-=(const dvar_matrix &x) | dvar_matrix | |
operator-=(const dmatrix &x) | dvar_matrix | |
operator/=(const prevariable &t) | dvar_matrix | |
operator/=(double t) | dvar_matrix | |
operator=(const dmatrix &m) | param_init_matrix | |
operator=(const dvar_matrix &m) | param_init_matrix | |
operator=(const dvariable &m) | param_init_matrix | |
operator=(const double &m) | param_init_matrix | |
named_dvar_matrix::operator=(const double m) | named_dvar_matrix | |
dvar_matrix::operator=(const prevariable &t) | dvar_matrix | |
operator[](int) | dvar_matrix | [inline] |
operator[](int) const | dvar_matrix | [inline] |
param_init_bounded_matrix(void) | param_init_bounded_matrix | |
param_init_matrix(void) | param_init_matrix | |
phase_save | initial_params | |
phase_start | initial_params | |
phase_stop | initial_params | |
pvm_pack(void) | param_init_bounded_matrix | [inline, virtual] |
pvm_unpack(void) | param_init_bounded_matrix | [inline, virtual] |
read(void) | initial_params | [static] |
read_from(const istream &) | dvar_matrix | |
read_from(const uistream &) | dvar_matrix | |
report_value(void) | param_init_matrix | |
reset(const dvar_vector &x) | initial_params | [static] |
reset(const dvector &x) | initial_params | [static] |
reset(const dvar_vector &x, const dvector &pen) | initial_params | [static] |
reset1(const dvar_vector &x, const dvector &g) | initial_params | [static] |
reset_all(const dvar_vector &x, const dvector &pen) | initial_params | [static] |
restart_phase | initial_params | [static] |
restore(const ifstream &ifs) | initial_params | [static] |
restore_all_values(const dvector &x, const int &ii) | initial_params | [static] |
restore_phase_start(void) | initial_params | |
restore_start_phase(void) | initial_params | [static] |
restore_value(const ifstream &ifs) | param_init_matrix | [virtual] |
restore_value_from_vector(const dvector &, const int &) | param_init_matrix | [virtual] |
rowfill(int j, const dvar_vector &v) | dvar_matrix | |
rowfill_randn(const int &i, long int &n) | dvar_matrix | |
rowfill_randn_ni(const int &i, long int &n) | dvar_matrix | |
rowfill_randu(const int &i, long int &n) | dvar_matrix | |
rowfill_randu_ni(const int &i, long int &n) | dvar_matrix | |
rowfill_seqadd(const int &, double, double) | dvar_matrix | |
rowmax(void) const | dvar_matrix | [inline] |
rowmin(void) const | dvar_matrix | [inline] |
rowshift(int min) | dvar_matrix | |
rowsize() const | dvar_matrix | [inline] |
save(void) | initial_params | [static] |
save(const ofstream &ofs, int prec) | initial_params | [static] |
save_all(const ofstream &_ofs, int prec, const dvector &g) | initial_params | [static] |
save_dvar_matrix_position(void) const | dvar_matrix | |
save_dvar_matrix_value(void) const | dvar_matrix | |
save_value(ofstream &ofs) | param_init_matrix | [virtual] |
save_value(const ofstream &ofs, int prec, const dvector &, int &offset) | param_init_matrix | [virtual] |
save_value(const ofstream &ofs, int prec) | param_init_matrix | [virtual] |
scalefactor | initial_params | [protected] |
sd_phase | initial_params | [static] |
sd_scale(const dvector &d, const dvector &x, const int &ii) | param_init_bounded_matrix | [virtual] |
sd_vscale(const dvar_vector &d, const dvar_vector &x, const int &ii) | param_init_bounded_matrix | [virtual] |
set_active_flag(void) | initial_params | |
set_active_only_random_effects(void) | initial_params | [static] |
set_active_random_effects(void) | initial_params | [static] |
set_all_simulation_bounds(const dmatrix &symbds) | initial_params | [static] |
set_all_simulation_bounds(const dmatrix &symbds, const dvector &) | initial_params | [static] |
set_inactive_flag(void) | initial_params | |
set_inactive_only_random_effects(void) | initial_params | [static] |
set_inactive_random_effects(void) | initial_params | [static] |
set_initial_value(double x) | initial_params | |
set_maxb(double b) | param_init_bounded_matrix | |
set_minb(double b) | param_init_bounded_matrix | |
set_only_random_effects_active() | initial_params | [virtual] |
set_only_random_effects_inactive() | initial_params | [virtual] |
set_phase_start(int x) | initial_params | |
set_random_effects_active() | initial_params | [virtual] |
set_random_effects_inactive() | initial_params | [virtual] |
set_scalefactor(const double) | initial_params | |
set_simulation_bounds(const dmatrix &symbds, const int &ii) | param_init_bounded_matrix | [protected, virtual] |
set_value(const dvar_vector &x, const int &ii, const dvariable &pen) | param_init_bounded_matrix | [virtual] |
set_value_inv(const dvector &x, const int &ii) | param_init_bounded_matrix | [virtual] |
setshare(const index_type &sf, const index_type &af) | param_init_matrix | [virtual] |
shallow_copy(const dvar_matrix &) | dvar_matrix | |
share_flags | initial_params | [protected] |
shared_set_value(const dvar_vector &, const int &, const dvariable &pen) | param_init_bounded_matrix | [virtual] |
shared_set_value_inv(const dvector &, const int &) | param_init_bounded_matrix | [virtual] |
size_count(void) | param_init_matrix | [virtual] |
stddev_curvscale(const dvector &d, const dvector &x) | initial_params | [static] |
stddev_scale(const dvector &d, const dvector &x) | initial_params | [static] |
stddev_vscale(const dvar_vector &d, const dvar_vector &x) | initial_params | [static] |
straight_through_flag | initial_params | [static] |
sub(int, int) | dvar_matrix | |
sumsq(const dvar_matrix &) | dvar_matrix | [friend] |
trans(const dvar_matrix &) | dvar_matrix | [friend] |
varsptr | initial_params | [static] |
write_on(const ostream &) const | dvar_matrix | |
write_on(const uostream &) const | dvar_matrix | |
xinit(const dvector &x) | initial_params | [static] |
xinit1(const dvector &x, const dvector &g) | initial_params | [static] |
xinit_all(const dvector &x) | initial_params | [static] |
~dvar_matrix() | dvar_matrix | |
~initial_params() | initial_params | [protected, virtual] |