- ADMB-IDE:
- A user-friendly development environment for AD Model Builder
- Editors:
- Information and downloads related to editors, syntax highlighting, etc.
- flex: tpl2cpp and tpl2rem are written in flex
- GCC:
- An archive of old GCC .zip files
- GDB for windows
- R: Working with ADMB and R
- ADMB2R
- ADMB output that can be read directly into R
- FLR
- PBSadmb
- Organize and run ADMB model from R
- Interfacing R and ADMB
- Document by Mark Maunder, written for the La Jolla meeting in March 2010
- plotMCMC
- R package for plotting multipanel MCMC diagnostic plots
- Reading report files using R
- I have written a useful R function that reads the contents of a report file (or any output file) and stores the contents in R in the form of a list object. This function is capable of reading single variables, vectors, and 2-D arrays (including ragged arrays). The R-code was inspired by some earlier code developed by George Watters.
- The format of *.tpl code requires the object name be printed first then the value(s), e.g.:
- report<<“Biomass”<<endl<<bt<<endl;
- Once the above line has been read into R the bt vector will be available as A$Biomass, where A is the list object, and Biomass is the name of the bt vector.
- To use this function, download reptoRlist.R. Then source this file in R (or put it at the top of your R-script). The function requires a file name argument (e.g., fn=”MyModel.rep”). To read the contents of a report file, simply use:
- Then all of the objects in your report file will be stored in the list object A.
- – S.Martell>
- r2admb
- An interface to the AD Model Builder system, simplifying and streamlining the use of ADMB from within R by Ben Bolker
- scape
- R package for plotting fisheries stock assessment data and model fit
- Specifications for R-ADMB interface (creating dat and pin files) with example
- glmmADMB
- R package: Generalized Linear Mixed Models with ADMB
- Valgrind
- Describe the procedure for using Valgrind to profile and check memory leaks.
- wintools.zip
- Windows tools required to build ADMB libraries from sources
- ADMB Tools for Windows
- Windows tools for compiling and using ADMB. Start by downloading and reading the “Installation Guide for ADMB on Windows”. This includes links to the tools available here.
